Amino acid metabolism
Wang L, Liu M, Lv YG, Zhang H. Purification of calmodulin from rice bran and activation of glutamate decarboxylase by Ca2+/calmodulin. J Sci Food Agric. 2010 Mar 15;90(4):669–75. doi: 10.1002/jsfa.3866. PMID: 20355097.; Bouché N, Fait A, Bouchez D, Møller SG, Fromm H. Mitochondrial succinic-semialdehyde dehydrogenase of the gamma-aminobutyrate shunt is required to restrict levels of reactive oxygen intermediates in plants. Proc Natl Acad Sci U S A. 2003 May 27;100(11):6843–8. PMID: 12740438; PMCID: PMC164534.; Park S-, Cho Y-. Identification of Functionally Important Residues of Arabidopsis thaliana S-Adenosylmethionine Decarboxylase. Journal of Biochemistry. 1999 Dec 01;126(6):996–1003. doi: 10.1093/oxfordjournals.jbchem.a022568.; Busch KB, Fromm H. Plant succinic semialdehyde dehydrogenase. Cloning, purification, localization in mitochondria, and regulation by adenine nucleotides. Plant Physiol. 1999 Oct;121(2):589–97. PMID: 10517851; PMCID: PMC59422.; Snedden WA, Koutsia N, Baum G, Fromm H. Activation of a Recombinant Petunia Glutamate Decarboxylase by Calcium/Calmodulin or by a Monoclonal Antibody Which Recognizes the Calmodulin Binding Domain. Journal of Biological Chemistry. 1996 Feb;271(8):4148–53. doi: 10.1074/jbc.271.8.4148.; Chen Y, Baum G, Fromm H. The 58-Kilodalton Calmodulin-Binding Glutamate Decarboxylase Is a Ubiquitous Protein in Petunia Organs and Its Expression Is Developmentally Regulated. Plant Physiol. 1994 Dec;106(4):1381–7. PMID: 12232415; PMCID: PMC159676.
Metabolites
2-Dehydro-3-deoxy-D-arabino-heptonate 7-phosphate
Formula: C7H13O10P (288.0246328)
CAS ID: 2627-73-8
D-erythro-1-(Imidazol-4-yl)glycerol 3-phosphate
Formula: C6H11N2O6P (238.0354716)
CAS ID: 36244-87-8
N-(5'-Phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-D-ribosyl)-4-imidazolecarboxamide
Formula: C15H25N5O15P2 (577.0822360000001)
CAS ID: 36244-86-7
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide(2-)
Formula: C9H13N4O8P (336.0470988)
CAS ID:
Enzyme
| EC Number | name | full name | note |
|---|---|---|---|
| 1.5.3.- | |||
| 1.1.1.23 | histidinol dehydrogenase | L-histidinol:NAD+ oxidoreductase | |
| 1.1.1.35 | 3-hydroxyacyl-CoA dehydrogenase | (S)-3-hydroxyacyl-CoA:NAD+ oxidoreductase | |
| 1.13.11.5 | homogentisate 1,2-dioxygenase | homogentisate:oxygen 1,2-oxidoreductase (decyclizing) | |
| 1.14.13.39 | nitric-oxide synthase (NADPH) | L-arginine,NADPH:oxygen oxidoreductase (nitric-oxide-forming) | |
| 1.2.1.24 | succinate-semialdehyde dehydrogenase (NAD+) | succinate-semialdehyde:NAD+ oxidoreductase | |
| 1.2.1.41 | glutamate-5-semialdehyde dehydrogenase | L-glutamate-5-semialdehyde:NADP+ 5-oxidoreductase (phosphorylating) | |
| 1.3.8.4 | isovaleryl-CoA dehydrogenase | 3-methylbutanoyl-CoA:electron-transfer flavoprotein oxidoreductase | |
| 1.4.7.1 | glutamate synthase (ferredoxin) | L-glutamate:ferredoxin oxidoreductase (transaminating) | |
| 2.1.1.7 | nicotinate N-methyltransferase | S-adenosyl-L-methionine:nicotinate N-methyltransferase | |
| 2.3.1.1 | amino-acid N-acetyltransferase | acetyl-CoA:L-glutamate N-acetyltransferase | |
| 2.3.1.35 | glutamate N-acetyltransferase | N2-acetyl-L-ornithine:L-glutamate N-acetyltransferase | |
| 2.4.2.17 | ATP phosphoribosyltransferase | 1-(5-phospho-D-ribosyl)-ATP:diphosphate phospho-alpha-D-ribosyl-transferase | |
| 2.6.1.13 | ornithine aminotransferase | L-ornithine:2-oxo-acid aminotransferase | |
| 2.7.2.11 | glutamate 5-kinase | ATP:L-glutamate 5-phosphotransferase | |
| 3.5.3.1 | arginase | L-arginine amidinohydrolase | |
| 4.1.1.20 | diaminopimelate decarboxylase | meso-2,6-diaminoheptanedioate carboxy-lyase (L-lysine-forming) | |
| 4.2.1.17 | enoyl-CoA hydratase | (3S)-3-hydroxyacyl-CoA hydro-lyase | |
| 4.4.1.28 | L-cysteine desulfidase | L-cysteine sulfide-lyase (deaminating; pyruvate-forming) | |
| 5.1.1.7 | diaminopimelate epimerase | LL-2,6-diaminoheptanedioate 2-epimerase | |
| 5.1.2.3 | 3-hydroxybutyryl-CoA epimerase | 3-hydroxybutanoyl-CoA 3-epimerase | |
| 5.3.1.23 | S-methyl-5-thioribose-1-phosphate isomerase | S-methyl-5-thio-alpha-D-ribose-1-phosphate aldose-ketose-isomerase | |
| 5.3.3.8 | DELTA3-DELTA2-enoyl-CoA isomerase | (3Z/3E)-alk-3-enoyl-CoA (2E)-isomerase | |
| 6.3.1.2 | glutamine synthetase | L-glutamate:ammonia ligase (ADP-forming) | |
| 6.3.5.4 | asparagine synthase (glutamine-hydrolysing) | L-aspartate:L-glutamine amido-ligase (AMP-forming) |
Proteins
| Protein ID | name | full name |
|---|