Metabolism of vitamins and cofactors

Metabolites

1-Methylnicotinamide

Formula: C7H9N2O (137.0714844)

CAS ID: 3106-60-3

5'-Deoxyadenosine

Formula: C10H13N5O3 (251.10183480000003)

CAS ID: 4754-39-6

6-Pyruvoyltetrahydropterin

Formula: C9H11N5O3 (237.0861856)

CAS ID: 89687-39-8

alpha-Tocopherol

Formula: C29H50O2 (430.38106)

CAS ID: 59-02-9

beta-Carotene

Formula: C40H56 (536.4381776)

CAS ID: 7235-40-7

beta-Ionone

Formula: C13H20O (192.151407)

CAS ID: 79-77-6

Biotin

Formula: C10H16N2O3S (244.08815859999999)

CAS ID: 58-85-5

Calcium cation

Formula: Ca (39.962591)

CAS ID: 14127-61-8

Cholesterol

Formula: C27H46O (386.3548466)

CAS ID: 57-88-5

CO2

Formula: CO2 (43.98983)

CAS ID: 124-38-9

Fe2+

Formula: Fe (55.934939)

CAS ID: 15438-31-0

H+

Formula: H (1.0078246)

CAS ID: 12408-02-5

H2O

Formula: H2O (18.0105642)

CAS ID: 7732-18-5

Hydrogen cyanide

Formula: CHN (27.010898599999997)

CAS ID: 74-90-8

Hydrogen peroxide

Formula: H2O2 (34.0054792)

CAS ID: 7722-84-1

Magnesium cation

Formula: Mg (23.98505)

CAS ID: 22537-22-0

Manganese(2+)

Formula: Mn (54.938046)

CAS ID: 7439-96-5

Menadione

Formula: C11H8O2 (172.0524268)

CAS ID: 58-27-5

Molybdopterin

Formula: C10H14N5O6PS2 (395.01231140000004)

CAS ID: 220399-50-8

Nicotinamide

Formula: C6H6N2O (122.0480106)

CAS ID: 98-92-0

Nicotinamide-beta-riboside

Formula: C11H15N2O5 (255.098092)

CAS ID: 1341-23-7

Oxygen

Formula: O2 (31.98983)

CAS ID: 7782-44-7

Pyridoxal

Formula: C8H9NO3 (167.0582404)

CAS ID: 66-72-8

Pyridoxamine

Formula: C8H12N2O2 (168.0898732)

CAS ID: 85-87-0

Pyridoxine

Formula: C8H11NO3 (169.0738896)

CAS ID: 65-23-6

Pyridoxine phosphate

Formula: C8H12NO6P (249.0402222)

CAS ID: 447-05-2

Retinal

Formula: C20H28O (284.2140038)

CAS ID: 116-31-4

Retinol

Formula: C20H30O (286.229653)

CAS ID: 68-26-8

Retinyl palmitate

Formula: C36H60O2 (524.459306)

CAS ID: 79-81-2

Sodium cation

Formula: Na (22.98977)

CAS ID: 17341-25-2

Thiamin triphosphate

Formula: C12H20N4O10P3S (505.011299)

CAS ID: 15666-52-1

Thiamine

Formula: C12H17N4OS (265.1123012)

CAS ID: 70-16-6

Urate

Formula: C5H4N4O3 (168.0283394)

CAS ID: 69-93-2

Zinc cation

Formula: Zn (63.929145)

CAS ID: 23713-49-7

Ubiquinol-10

Formula: C59H92O4 (864.6995231999999)

CAS ID: 5677-55-4

Menatetrenone

Formula: C31H40O2 (444.302814)

CAS ID: 863-61-6

formate

Formula: CHO2 (44.997654600000004)

CAS ID: 71-47-6

2-oxoglutarate(2-)

Formula: C5H4O5 (144.00587339999998)

CAS ID: 64-15-3

3-(4-hydroxyphenyl)pyruvate

Formula: C9H7O4 (179.0344322)

CAS ID: 622-54-8

hexadecanoate

Formula: C16H31O2 (255.2323926)

CAS ID: 143-20-4

4-hydroxybenzoate

Formula: C7H5O3 (137.023868)

CAS ID: 456-23-5

nicotinate

Formula: C6H4NO2 (122.0242024)

CAS ID:

citrate(3-)

Formula: C6H5O7 (189.00352800000002)

CAS ID: 126-44-3

molybdate

Formula: MoO4 (161.885065)

CAS ID: 14259-85-9

NADPH(4-)

Formula: C21H26N7O17P3 (741.0598016)

CAS ID: 53-57-6

ATP(4-)

Formula: C10H12N5O13P3 (502.9644492)

CAS ID:

GTP(4-)

Formula: C10H12N5O14P3 (518.9593642)

CAS ID: 86527-72-2

NAD(1-)

Formula: C21H26N7O14P2 (662.1012936000001)

CAS ID: 53-84-9

ADP(3-)

Formula: C10H12N5O10P2 (424.0059412)

CAS ID:

NADP(3-)

Formula: C21H25N7O17P3 (740.051977)

CAS ID: 53-59-8

L-lysinium(1+)

Formula: C6H15N2O2 (147.113347)

CAS ID: 56-87-1



Enzyme

EC Number name full name note
1.17.3.-
1.1.1.100 3-oxoacyl-[acyl-carrier-protein] reductase (3R)-3-hydroxyacyl-[acyl-carrier protein]:NADP+ oxidoreductase
1.1.1.153 sepiapterin reductase (L-erythro-7,8-dihydrobiopterin forming) L-erythro-7,8-dihydrobiopterin:NADP+ oxidoreductase
1.1.1.42 isocitrate dehydrogenase (NADP+) isocitrate:NADP+ oxidoreductase (decarboxylating)
1.13.11.46 4-hydroxymandelate synthase 4-hydroxyphenylpyruvate:oxygen oxidoreductase (decarboxylating)
1.13.11.63 beta-carotene 15,15'-dioxygenase beta-carotene:oxygen 15,15'-dioxygenase (bond-cleaving)
1.14.13.39 nitric-oxide synthase (NADPH) L-arginine,NADPH:oxygen oxidoreductase (nitric-oxide-forming)
1.14.15.45 4-hydroxy-3-polyprenylbenzoate 5-hydroxylase 4-hydroxy-3-all-trans-polyprenylbenzoate,ferredoxin:oxygen oxidoreductase (5-hydroxylating)
1.14.15.46 2-methoxy-6-polyprenylphenol 4-hydroxylase 2-methoxy-6-(all-trans-polyprenyl)phenol,ferredoxin:oxygen oxidoreductase (4-hydroxylating)
1.16.1.8 [methionine synthase] reductase [methionine synthase]-methylcob(III)alamin,S-adenosyl-L-homocysteine:NADP+ oxidoreductase
1.17.4.4 vitamin-K-epoxide reductase (warfarin-sensitive) phylloquinone:disulfide oxidoreductase
1.2.3.1 aldehyde oxidase aldehyde:oxygen oxidoreductase
1.20.4.2 methylarsonate reductase glutathione:methylarsonate oxidoreductase
1.3.1.39 enoyl-[acyl-carrier-protein] reductase (NADPH, Re-specific) acyl-[acyl-carrier protein]:NADP+ oxidoreductase (Re-specific)
1.4.3.5 pyridoxal 5'-phosphate synthase pyridoxamine-5'-phosphate:oxygen oxidoreductase (deaminating)
1.5.1.3 dihydrofolate reductase 5,6,7,8-tetrahydrofolate:NADP+ oxidoreductase
1.5.1.5 methylenetetrahydrofolate dehydrogenase (NADP+) 5,10-methylenetetrahydrofolate:NADP+ oxidoreductase
1.5.1.6 formyltetrahydrofolate dehydrogenase 10-formyltetrahydrofolate:NADP+ oxidoreductase
1.6.2.2 cytochrome-b5 reductase NADH:ferricytochrome-b5 oxidoreductase
1.6.3.5 renalase dihydro-NAD(P):oxygen oxidoreductase (H2O2-forming)
1.8.5.1 glutathione dehydrogenase (ascorbate) glutathione:dehydroascorbate oxidoreductase
2.1.1.114 polyprenyldihydroxybenzoate methyltransferase S-adenosyl-L-methionine:3,4-dihydroxy-5-all-trans-polyprenylbenzoate 3-O-methyltransferase
2.1.1.13 methionine synthase 5-methyltetrahydrofolate:L-homocysteine S-methyltransferase
2.1.1.201 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase S-adenosyl-L-methionine:2-methoxy-6-all-trans-polyprenyl-1,4-benzoquinol 5-C-methyltransferase
2.1.1.64 3-demethylubiquinol 3-O-methyltransferase S-adenosyl-L-methionine:3-hydroxy-2-methoxy-5-methyl-6-(all-trans-polyprenyl)-1,4-benzoquinol 3-O-methyltransferase
2.10.1.1 molybdopterin molybdotransferase adenylyl-molybdopterin:molybdate molybdate transferase (AMP-forming)
2.3.1.135 phosphatidylcholine-retinol O-acyltransferase phosphatidylcholine:retinol---[cellular-retinol-binding-protein] O-acyltransferase
2.3.1.38 [acyl-carrier-protein] S-acetyltransferase acetyl-CoA:[acyl-carrier protein] S-acetyltransferase
2.3.1.39 [acyl-carrier-protein] S-malonyltransferase malonyl-CoA:[acyl-carrier protein] S-malonyltransferase
2.3.1.41 beta-ketoacyl-[acyl-carrier-protein] synthase I acyl-[acyl-carrier protein]:malonyl-[acyl-carrier protein] C-acyltransferase (decarboxylating)
2.3.1.85 fatty-acid synthase system acyl-CoA:malonyl-CoA C-acyltransferase (decarboxylating, oxoacyl- and enoyl-reducing and thioester-hydrolysing)
2.4.2.12 nicotinamide phosphoribosyltransferase nicotinamide-D-ribonucleotide:diphosphate phospho-alpha-D-ribosyltransferase
2.4.2.19 nicotinate-nucleotide diphosphorylase (carboxylating) nicotinate-D-ribonucleotide:diphosphate phospho-alpha-D-ribosyltransferase (carboxylating)
2.4.99.20 2'-phospho-ADP-ribosyl cyclase/2'-phospho-cyclic-ADP-ribose transferase NADP+:nicotinate ADP-ribosyltransferase
2.5.1.18 glutathione transferase RX:glutathione R-transferase
2.5.1.39 4-hydroxybenzoate polyprenyltransferase polyprenyl-diphosphate:4-hydroxybenzoate polyprenyltransferase
2.5.1.91 all-trans-decaprenyl-diphosphate synthase (2E,6E)-farnesyl-diphosphate:isopentenyl-diphosphate farnesyltranstransferase (adding 7 isopentenyl units)
2.7.1.173 nicotinate riboside kinase ATP:beta-D-ribosylnicotinate 5-phosphotransferase
2.7.1.22 ribosylnicotinamide kinase ATP:N-ribosylnicotinamide 5'-phosphotransferase
2.7.1.23 NAD+ kinase ATP:NAD+ 2'-phosphotransferase
2.7.1.35 pyridoxal kinase ATP:pyridoxal 5'-phosphotransferase
2.7.11.1 non-specific serine/threonine protein kinase ATP:protein phosphotransferase (non-specific)
2.7.11.12 cGMP-dependent protein kinase ATP:protein phosphotransferase (cGMP-dependent)
2.7.7.1 nicotinamide-nucleotide adenylyltransferase ATP:nicotinamide-nucleotide adenylyltransferase
2.7.7.18 nicotinate-nucleotide adenylyltransferase ATP:nicotinate-ribonucleotide adenylyltransferase
2.7.7.2 FAD synthase ATP:FMN adenylyltransferase
2.7.7.75 molybdopterin adenylyltransferase ATP:molybdopterin adenylyltransferase
2.7.8.7 holo-[acyl-carrier-protein] synthase CoA-[4'-phosphopantetheine]:apo-[acyl-carrier protein] 4'-pantetheinephosphotransferase
2.8.1.7 cysteine desulfurase L-cysteine:acceptor sulfurtransferase
3.1.1.3 triacylglycerol lipase triacylglycerol acylhydrolase
3.1.1.4 phospholipase A2 phosphatidylcholine 2-acylhydrolase
3.1.1.5 lysophospholipase 2-lysophosphatidylcholine acylhydrolase
3.1.2.14 oleoyl-[acyl-carrier-protein] hydrolase oleoyl-[acyl-carrier protein] hydrolase
3.1.3.2 acid phosphatase phosphate-monoester phosphohydrolase (acid optimum)
3.1.3.35 thymidylate 5'-phosphatase thymidylate 5'-phosphohydrolase
3.1.3.5 5'-nucleotidase 5'-ribonucleotide phosphohydrolase
3.1.3.89 5'-deoxynucleotidase 2'-deoxyribonucleoside 5'-monophosphate phosphohydrolase
3.1.3.91 7-methylguanosine nucleotidase N7-methyl-GMP phosphohydrolase
3.1.3.99 IMP-specific 5'-nucleotidase inosine 5'-phosphate phosphohydrolase
3.1.4.1 phosphodiesterase I oligonucleotide 5'-nucleotidohydrolase
3.2.2.6 ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase NAD+ glycohydrolase (cyclic ADP-ribose-forming)
3.5.1.12 biotinidase biocytin amidohydrolase
3.5.4.16 GTP cyclohydrolase I GTP 7,8-8,9-dihydrolase
3.5.4.9 methenyltetrahydrofolate cyclohydrolase 5,10-methenyltetrahydrofolate 5-hydrolase (decyclizing)
3.6.1.18 FAD diphosphatase FAD nucleotidohydrolase
3.6.1.22 NAD+ diphosphatase NAD+ phosphohydrolase
3.6.1.28 thiamine-triphosphatase thiamine-triphosphate phosphohydrolase
3.6.1.9 nucleotide diphosphatase dinucleotide nucleotidohydrolase
3.6.4.10 non-chaperonin molecular chaperone ATPase ATP phosphohydrolase (polypeptide-polymerizing)
4.1.1.130 4-hydroxy-3-methoxy-5-polyprenylbenzoate decarboxylase 4-hydroxy-3-methoxy-5-all-trans-polyprenylbenzoate carboxy-lyase
4.2.1.3 aconitate hydratase citrate(isocitrate) hydro-lyase (cis-aconitate-forming)
4.2.1.59 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (3R)-3-hydroxyoctanoyl-[acyl-carrier protein] hydro-lyase (oct-2-enoyl-[acyl-carrier protein]-forming)
4.2.1.93 ATP-dependent NAD(P)H-hydrate dehydratase (6S)-6beta-hydroxy-1,4,5,6-tetrahydronicotinamide-adenine-dinucleotide hydro-lyase (ATP-hydrolysing; NADH-forming)
4.2.3.12 6-pyruvoyltetrahydropterin synthase 7,8-dihydroneopterin 3'-triphosphate triphosphate-lyase (6-pyruvoyl-5,6,7,8-tetrahydropterin-forming)
5.1.99.6 NAD(P)H-hydrate epimerase (6R)-6beta-hydroxy-1,4,5,6-tetrahydronicotinamide-adenine dinucleotide 6-epimerase
6.3.4.21 nicotinate phosphoribosyltransferase 5-phospho-alpha-D-ribose 1-diphosphate:nicotinate ligase (ADP, diphosphate-forming)
6.3.4.3 formate-tetrahydrofolate ligase formate:tetrahydrofolate ligase (ADP-forming)
6.3.5.1 NAD+ synthase (glutamine-hydrolysing) deamido-NAD+:L-glutamine amido-ligase (AMP-forming)
6.4.1.1 pyruvate carboxylase pyruvate:carbon-dioxide ligase (ADP-forming)
6.4.1.2 acetyl-CoA carboxylase acetyl-CoA:hydrogencarbonate ligase (ADP-forming)
6.4.1.3 propionyl-CoA carboxylase propanoyl-CoA:carbon-dioxide ligase (ADP-forming)
6.4.1.4 methylcrotonoyl-CoA carboxylase 3-methylcrotonoyl-CoA:carbon-dioxide ligase (ADP-forming)
7.6.2.2 ABC-type xenobiotic transporter ATP phosphohydrolase (ABC-type, xenobiotic-exporting)
7.6.2.3 ABC-type glutathione-S-conjugate transporter ATP + H2O + glutathione-S-conjugate[side 1] = ADP + phosphate + glutathione-S-conjugate[side 2]


Proteins

Protein ID name full name