Metabolite Card

Formula: C10H16N2O3S (244.0882)
SMILES: [H][C@]12CS[C@@H](CCCCC(O)=O)[C@@]1([H])NC(=O)N2

Synonyms [en]

biotin; d-biotin; vitamin H; coenzyme R; Biotine; Biotina

Reviewed

Last reviewed on 2024-06-28.

Cite this Page

Biotin. 数据之源,洞见之始. SMRUCC genomics institute, a synthetic life researcher from China. https://biocad_registry.innovation.ac.cn/s/(-)-arctiin (retrieved 2026-01-03) (CAD Registry RN: BioCAD00000007472). Licensed under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).

Note

Biotin is an enzyme co-factor present in minute amounts in every living cell. Biotin is also known as coenzyme R and vitamin H or B7. It occurs mainly bound to proteins or polypeptides and is abundant in liver, kidney, pancreas, yeast, and milk. Biotin has been recognized as an essential nutrient. Humans fulfill their biotin requirement through their diet through endogenous reutilization of biotin and perhaps through the capture of biotin generated in the intestinal flora. The utilization of biotin for covalent attachment to carboxylases and its reutilization through the release of carboxylase biotin after proteolytic degradation constitutes the 'biotin cycle'. Biotin deficiency is associated with neurological manifestations, skin rash, hair loss, and metabolic disturbances that are thought to relate to the various carboxylase deficiencies (metabolic ketoacidosis with lactic acidosis). It has also been suggested that biotin deficiency is associated with protein malnutrition, and that marginal biotin deficiency in pregnant women may be teratogenic. Biotin acts as a carboxyl carrier in carboxylation reactions. There are four biotin-dependent carboxylases in mammals: those of propionyl-CoA (PCC), 3-methylcrotonyl-CoA (MCC), pyruvate (PC), and acetyl-CoA carboxylases (isoforms ACC-1 and ACC-2). All but ACC-2 are mitochondrial enzymes. The biotin moiety is covalently bound to the epsilon amino group of a lysine residue in each of these carboxylases in a domain 60-80 amino acids long. The domain is structurally similar among carboxylases from bacteria to mammals. Evidence is emerging that biotin participates in processes other than classical carboxylation reactions. Specifically, novel roles for biotin in cell signalling, gene expression, and chromatin structure have been identified in recent years. Human cells accumulate biotin by using both the sodium-dependent multivitamin transporter and monocarboxylate transporter 1. These transporters and other biotin-binding proteins partition biotin to compartments involved in biotin signalling: cytoplasm, mitochondria, and nuclei. The activity of cell signals such as biotinyl-AMP, Sp1 and Sp3, nuclear factor (NF)-kappaB, and receptor tyrosine kinases depends on biotin supply. Consistent with a role for biotin and its catabolites in modulating these cell signals, greater than 2000 biotin-dependent genes have been identified in various human tissues. Many biotin-dependent gene products play roles in signal transduction and localize to the cell nucleus, consistent with a role for biotin in cell signalling. Posttranscriptional events related to ribosomal activity and protein folding may further contribute to the effects of biotin on gene expression. Finally, research has shown that biotinidase and holocarboxylase synthetase mediate covalent binding of biotin to histones (DNA-binding proteins), affecting chromatin structure; at least seven biotinylation sites have been identified in human histones. Biotinylation of histones appears to play a role in cell proliferation, gene silencing, and the cellular response to DNA repair. Roles for biotin in cell signalling and chromatin structure are consistent with the notion that biotin has a unique significance in cell biology (PMID: 15992684, 16011464).

Entity Information

DBLinks

Other DBLinks
  • CAS Registry Number: 1150-62-5
  • CAS Registry Number: 22377-59-9
  • CAS Registry Number: 4375-00-2
  • CAS Registry Number: 5652-41-5
  • CAS Registry Number: 56846-45-8
  • CAS Registry Number: 58-85-5
  • CAS Registry Number: 68225-55-8
  • PubChem: 171548
  • PubChem: 253
  • PubChem: 3420
  • ChEBI: ChEBI:15956
  • HMDB: HMDB0000030
  • KEGG: C00120
  • KEGG: D00029
  • BioCyc: BIOTIN
  • NCBI MeSH: Biotin
  • Wikipedia: Biotin
  • DrugBank: DB00121
  • RefMet: RM0028735
  • MoNA: BAF_UVA_POS000704
  • MoNA: BAF_UVA_POS000705
  • MoNA: BAF_UVA_POS000706
  • MoNA: BAF_UVA_POS000707
  • MoNA: BAF_UVA_POS001065
  • MoNA: BML00278
  • MoNA: BML00287
  • MoNA: BML00305
  • MoNA: BML00309
  • MoNA: BML80825
  • MoNA: BML80826
  • MoNA: BML80827
  • MoNA: BML80828
  • MoNA: CCMSLIB00000479609
  • MoNA: CCMSLIB00000578087
  • MoNA: CCMSLIB00000578365
  • MoNA: CCMSLIB00004680094
  • MoNA: CCMSLIB00005463592
  • MoNA: CCMSLIB00005463593
  • MoNA: CCMSLIB00005463594
  • MoNA: CCMSLIB00005463645
  • MoNA: CCMSLIB00005720560
  • MoNA: CCMSLIB00005720859
  • MoNA: EMBL-MCF_spec157147
  • MoNA: EMBL-MCF_spec157184
  • MoNA: EMBL-MCF_spec88257
  • MoNA: EMBL_MCF_2_0_HRMS_Library000125
  • MoNA: EMBL_MCF_2_0_HRMS_Library000126
  • MoNA: EMBL_MCF_2_0_HRMS_Library000127
  • MoNA: EMBL_MCF_2_0_HRMS_Library000329
  • MoNA: FiehnHILIC000227
  • MoNA: FiehnHILIC001098
  • MoNA: FiehnHILIC001801
  • MoNA: FiehnLib000769
  • MoNA: FIO00016
  • MoNA: FIO00017
  • MoNA: FIO00018
  • MoNA: FIO00019
  • MoNA: FIO00020
  • MoNA: FIO00021
  • MoNA: FIO00022
  • MoNA: HMDB0000030_c_ms_1994
  • MoNA: KO000351
  • MoNA: KO000352
  • MoNA: KO000353
  • MoNA: KO000354
  • MoNA: KO000355
  • MoNA: KO008882
  • MoNA: KO008883
  • MoNA: KO008884
  • MoNA: KO008885
  • MoNA: LU132801
  • MoNA: LU132802
  • MoNA: LU132803
  • MoNA: LU132804
  • MoNA: LU132805
  • MoNA: LU132806
  • MoNA: LU132851
  • MoNA: LU132852
  • MoNA: LU132853
  • MoNA: LU132854
  • MoNA: LU132855
  • MoNA: LU132856
  • MoNA: ML002701
  • MoNA: ML002751
  • MoNA: MoNA016666
  • MoNA: MoNA016847
  • MoNA: MoNA023829
  • MoNA: MoNA032500
  • MoNA: MoNA032501
  • MoNA: MoNA032503
  • MoNA: MoNA032736
  • MoNA: MoNA032738
  • MoNA: MoNA032739
  • MoNA: MoNA034593
  • MoNA: MoNA034594
  • MoNA: MoNA034596
  • MoNA: MoNA034597
  • MoNA: MoNA034598
  • MoNA: MoNA034599
  • MoNA: MoNA034936
  • MoNA: MoNA034937
  • MoNA: MoNA034938
  • MoNA: MoNA034939
  • MoNA: MoNA034940
  • MoNA: MoNA034941
  • MoNA: MoNA037058
  • MoNA: MoNA037325
  • MoNA: MoNA037757
  • MoNA: MoNA037759
  • MoNA: MoNA038065
  • MoNA: MoNA038068
  • MoNA: OUF00130
  • MoNA: RP021901
  • MoNA: RP021902
  • MoNA: RP021903
  • MoNA: RP021911
  • MoNA: RP021912
  • MoNA: RP021913
  • MoNA: VF-NPL-LTQ000234
  • MoNA: VF-NPL-LTQ000235
  • MoNA: VF-NPL-LTQ000236
  • MoNA: VF-NPL-LTQ007747
  • MoNA: VF-NPL-LTQ007748
  • MoNA: VF-NPL-QEHF028111
  • MoNA: VF-NPL-QEHF028112
  • MoNA: VF-NPL-QEHF028113
  • MoNA: VF-NPL-QEHF028114
  • MoNA: VF-NPL-QEHF028115
  • MoNA: VF-NPL-QEHF028116
  • MoNA: VF-NPL-QEHF028117
  • MoNA: VF-NPL-QEHF028118
  • MoNA: VF-NPL-QEHF028119
  • MoNA: VF-NPL-QEHF028120
  • MoNA: VF-NPL-QEHF028121
  • MoNA: VF-NPL-QEHF028122
  • MoNA: VF-NPL-QEHF028123
  • MoNA: VF-NPL-QEHF028124
  • MoNA: VF-NPL-QEHF028125
  • MoNA: VF-NPL-QTOF006888
  • MoNA: VF-NPL-QTOF006889
  • MoNA: VF-NPL-QTOF006890
  • MoNA: VF-NPL-QTOF006891
  • MoNA: VF-NPL-QTOF006892
  • MoNA: VF-NPL-QTOF006893
  • MoNA: VF-NPL-QTOF006894
  • MoNA: VF-NPL-QTOF006895
  • Metlin: METLIN_243
  • Coconut NaturalProduct: CNP0177348.1
  • Coconut NaturalProduct: CNP0177348.3
  • Coconut NaturalProduct: CNP0177348.5
  • Coconut NaturalProduct: CNP0177348.6
  • Coconut NaturalProduct: CNP0177348.7
  • Coconut NaturalProduct: CNP0177348.8
  • Coconut NaturalProduct: CNP0565242.0

Class / Ontology

Metabolic Network
ID EC Number Name
KEGG:R01074 6.2.1.11 biotin:CoA ligase (AMP-forming);
KEGG:R01075 6.2.1.11 biotin:CoA ligase (AMP-forming)
KEGG:R01077 3.5.1.12 N6-D-biotinyl-L-lysine amidohydrolase
KEGG:R01078 2.8.1.6 dethiobiotin:sulfur sulfurtransferase
KEGG:R04562 6.3.4.15 biotin:apo-[acetyl-CoA:carbondioxide ligase (ADP-forming)] ligase (AMP-forming)
KEGG:R04563 6.3.4.9 biotin:apo[methylmalonyl-CoA:pyruvate carboxyltransferase] ligase (AMP-forming)
KEGG:R04582 6.3.4.10 biotin:apo-[propionyl-CoA:carbon-dioxide ligase (ADP-forming)]
KEGG:R04604 6.3.4.11 biotin:apo-[3-methylcrotonoyl-CoA:carbon-dioxide ligase (ADP-forming)] ligase (AMP-forming)
KEGG:R10127 1.-.-.- biotin:NADP+ S-oxidoreductase (biotin S-oxide-forming)
BioCyc:RXN0-7192 BIOTIN + ATP + PROTON --> BIO-5-AMP + PPI
BioCyc:BIOTINLIG-RXN 6.3.4.15 BCCP-L-lysine + BIOTIN + ATP --> PPI + AMP + BCCP-biotin-L-lysine + PROTON
BioCyc:RXN2B79-69 BIOTIN + ATP + WATER --> BIOTIN + ADP + Pi + PROTON
BioCyc:TRANS-RXN0-240 BIOTIN --> BIOTIN
BioCyc:RXN-17473 S-ADENOSYLMETHIONINE + CPD-5662 --> BIOTIN + CH33ADO + MET + PROTON
BioCyc:RXN0-6277 1.8.4.- CPD-722 + Red-Thioredoxin --> BIOTIN + Ox-Thioredoxin + WATER
BioCyc:2.8.1.6-RXN 2.8.1.6 2 S-ADENOSYLMETHIONINE + Sulfurated-Sulfur-Acceptors + DETHIOBIOTIN + 2 Reduced-2Fe-2S-Ferredoxins --> Unsulfurated-Sulfur-Acceptors + BIOTIN + 2 CH33ADO + 2 MET + 2 Oxidized-2Fe-2S-Ferredoxins
BioCyc:6.3.4.9-RXN 6.3.4.9 apo-Transcarboxylases + BIOTIN + ATP --> holo-Transcarboxylases + PPI + AMP
BioCyc:6.3.4.10-RXN 6.3.4.10 ATP + BIOTIN + Apo-Propionyl-CoA-CO2-ligases --> AMP + PPI + Propionyl-CoA-CO2-ligases
BioCyc:BIOTIN--COA-LIGASE-RXN 6.2.1.11 CO-A + BIOTIN + ATP --> CPD-203 + PPI + AMP
BioCyc:RXN-16474 3.5.1.12 CPD-17700 + WATER --> BIOTIN + LYS
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Organism Source

Taxonomy Source

  1. Arabidopsis thaliana [ncbi taxid: 3702]
  2. Artemisia cina [ncbi taxid: 1473222]
  3. Cassia alata [ncbi taxid: ]
  4. Escherichia coli [ncbi taxid: 562]
  5. FOOD SAKE [ncbi taxid: ]
  6. Unknown-fungus sp. [ncbi taxid: ]

Pathway Synthetic

pathway id name
PathBank:SMP0000785 Biotin Metabolism
PathBank:SMP0002079 Biotin-Carboxyl Carrier Protein Assembly
Plant Reactome:R-OAU-2744345 Metabolism and regulation
Plant Reactome:R-CME-1119610 Biotin biosynthesis II
Plant Reactome:R-FVE-1119610 Biotin biosynthesis II
Plant Reactome:R-MES-2744345 Metabolism and regulation
Plant Reactome:R-MES-2867929 Cofactor biosyntheses
Plant Reactome:R-TDI-2744345 Metabolism and regulation
Plant Reactome:R-TDI-1119610 Biotin biosynthesis II
Plant Reactome:R-OGU-1119610 Biotin biosynthesis II
Plant Reactome:R-GSU-1119610 Biotin biosynthesis II
Plant Reactome:R-PTI-2744345 Metabolism and regulation
Plant Reactome:R-PTI-2867929 Cofactor biosyntheses
Plant Reactome:R-GMA-2744345 Metabolism and regulation
Plant Reactome:R-GMA-1119610 Biotin biosynthesis II
Plant Reactome:R-PDA-2744345 Metabolism and regulation
Plant Reactome:R-PVU-2744345 Metabolism and regulation
Plant Reactome:R-PVU-1119610 Biotin biosynthesis II
Plant Reactome:R-BNA-1119610 Biotin biosynthesis II
Plant Reactome:R-CCA-2867929 Cofactor biosyntheses
View All Pathways