Biotin (BioCAD00000007472)
blood cerebrospinal fluid (csf) feces saliva urine all tissues prostate plant natural products microbial natural products
Metabolite Card
Formula: C10H16N2O3S (244.0882)
SMILES: [H][C@]12CS[C@@H](CCCCC(O)=O)[C@@]1([H])NC(=O)N2
Synonyms [en]
biotin; d-biotin; vitamin H; coenzyme R; Biotine; Biotina
Last reviewed on 2024-06-28.
Cite this Page
Biotin. 数据之源,洞见之始. SMRUCC genomics institute, a synthetic life researcher from China.
https://biocad_registry.innovation.ac.cn/s/(-)-arctiin
(retrieved
2026-01-03) (CAD Registry RN: BioCAD00000007472). Licensed
under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).
Note
Biotin is an enzyme co-factor present in minute amounts in every living cell. Biotin is also known as coenzyme R and vitamin H or B7. It occurs mainly bound to proteins or polypeptides and is abundant in liver, kidney, pancreas, yeast, and milk. Biotin has been recognized as an essential nutrient. Humans fulfill their biotin requirement through their diet through endogenous reutilization of biotin and perhaps through the capture of biotin generated in the intestinal flora. The utilization of biotin for covalent attachment to carboxylases and its reutilization through the release of carboxylase biotin after proteolytic degradation constitutes the 'biotin cycle'. Biotin deficiency is associated with neurological manifestations, skin rash, hair loss, and metabolic disturbances that are thought to relate to the various carboxylase deficiencies (metabolic ketoacidosis with lactic acidosis). It has also been suggested that biotin deficiency is associated with protein malnutrition, and that marginal biotin deficiency in pregnant women may be teratogenic. Biotin acts as a carboxyl carrier in carboxylation reactions. There are four biotin-dependent carboxylases in mammals: those of propionyl-CoA (PCC), 3-methylcrotonyl-CoA (MCC), pyruvate (PC), and acetyl-CoA carboxylases (isoforms ACC-1 and ACC-2). All but ACC-2 are mitochondrial enzymes. The biotin moiety is covalently bound to the epsilon amino group of a lysine residue in each of these carboxylases in a domain 60-80 amino acids long. The domain is structurally similar among carboxylases from bacteria to mammals. Evidence is emerging that biotin participates in processes other than classical carboxylation reactions. Specifically, novel roles for biotin in cell signalling, gene expression, and chromatin structure have been identified in recent years. Human cells accumulate biotin by using both the sodium-dependent multivitamin transporter and monocarboxylate transporter 1. These transporters and other biotin-binding proteins partition biotin to compartments involved in biotin signalling: cytoplasm, mitochondria, and nuclei. The activity of cell signals such as biotinyl-AMP, Sp1 and Sp3, nuclear factor (NF)-kappaB, and receptor tyrosine kinases depends on biotin supply. Consistent with a role for biotin and its catabolites in modulating these cell signals, greater than 2000 biotin-dependent genes have been identified in various human tissues. Many biotin-dependent gene products play roles in signal transduction and localize to the cell nucleus, consistent with a role for biotin in cell signalling. Posttranscriptional events related to ribosomal activity and protein folding may further contribute to the effects of biotin on gene expression. Finally, research has shown that biotinidase and holocarboxylase synthetase mediate covalent binding of biotin to histones (DNA-binding proteins), affecting chromatin structure; at least seven biotinylation sites have been identified in human histones. Biotinylation of histones appears to play a role in cell proliferation, gene silencing, and the cellular response to DNA repair. Roles for biotin in cell signalling and chromatin structure are consistent with the notion that biotin has a unique significance in cell biology (PMID: 15992684, 16011464).
DBLinks
- CAS Registry Number: 58-85-5
- PubChem CID: 171548
- ChEBI: 15956
- HMDB: HMDB0000030
- LipidMaps:
- KEGG: C00120
- BioCyc: BIOTIN
- NCBI MeSH: Biotin
- Wikipedia: Biotin
Other DBLinks
- CAS Registry Number: 1150-62-5
- CAS Registry Number: 22377-59-9
- CAS Registry Number: 4375-00-2
- CAS Registry Number: 5652-41-5
- CAS Registry Number: 56846-45-8
- CAS Registry Number: 58-85-5
- CAS Registry Number: 68225-55-8
- PubChem: 171548
- PubChem: 253
- PubChem: 3420
- ChEBI: ChEBI:15956
- HMDB: HMDB0000030
- KEGG: C00120
- KEGG: D00029
- BioCyc: BIOTIN
- NCBI MeSH: Biotin
- Wikipedia: Biotin
- DrugBank: DB00121
- RefMet: RM0028735
- MoNA: BAF_UVA_POS000704
- MoNA: BAF_UVA_POS000705
- MoNA: BAF_UVA_POS000706
- MoNA: BAF_UVA_POS000707
- MoNA: BAF_UVA_POS001065
- MoNA: BML00278
- MoNA: BML00287
- MoNA: BML00305
- MoNA: BML00309
- MoNA: BML80825
- MoNA: BML80826
- MoNA: BML80827
- MoNA: BML80828
- MoNA: CCMSLIB00000479609
- MoNA: CCMSLIB00000578087
- MoNA: CCMSLIB00000578365
- MoNA: CCMSLIB00004680094
- MoNA: CCMSLIB00005463592
- MoNA: CCMSLIB00005463593
- MoNA: CCMSLIB00005463594
- MoNA: CCMSLIB00005463645
- MoNA: CCMSLIB00005720560
- MoNA: CCMSLIB00005720859
- MoNA: EMBL-MCF_spec157147
- MoNA: EMBL-MCF_spec157184
- MoNA: EMBL-MCF_spec88257
- MoNA: EMBL_MCF_2_0_HRMS_Library000125
- MoNA: EMBL_MCF_2_0_HRMS_Library000126
- MoNA: EMBL_MCF_2_0_HRMS_Library000127
- MoNA: EMBL_MCF_2_0_HRMS_Library000329
- MoNA: FiehnHILIC000227
- MoNA: FiehnHILIC001098
- MoNA: FiehnHILIC001801
- MoNA: FiehnLib000769
- MoNA: FIO00016
- MoNA: FIO00017
- MoNA: FIO00018
- MoNA: FIO00019
- MoNA: FIO00020
- MoNA: FIO00021
- MoNA: FIO00022
- MoNA: HMDB0000030_c_ms_1994
- MoNA: KO000351
- MoNA: KO000352
- MoNA: KO000353
- MoNA: KO000354
- MoNA: KO000355
- MoNA: KO008882
- MoNA: KO008883
- MoNA: KO008884
- MoNA: KO008885
- MoNA: LU132801
- MoNA: LU132802
- MoNA: LU132803
- MoNA: LU132804
- MoNA: LU132805
- MoNA: LU132806
- MoNA: LU132851
- MoNA: LU132852
- MoNA: LU132853
- MoNA: LU132854
- MoNA: LU132855
- MoNA: LU132856
- MoNA: ML002701
- MoNA: ML002751
- MoNA: MoNA016666
- MoNA: MoNA016847
- MoNA: MoNA023829
- MoNA: MoNA032500
- MoNA: MoNA032501
- MoNA: MoNA032503
- MoNA: MoNA032736
- MoNA: MoNA032738
- MoNA: MoNA032739
- MoNA: MoNA034593
- MoNA: MoNA034594
- MoNA: MoNA034596
- MoNA: MoNA034597
- MoNA: MoNA034598
- MoNA: MoNA034599
- MoNA: MoNA034936
- MoNA: MoNA034937
- MoNA: MoNA034938
- MoNA: MoNA034939
- MoNA: MoNA034940
- MoNA: MoNA034941
- MoNA: MoNA037058
- MoNA: MoNA037325
- MoNA: MoNA037757
- MoNA: MoNA037759
- MoNA: MoNA038065
- MoNA: MoNA038068
- MoNA: OUF00130
- MoNA: RP021901
- MoNA: RP021902
- MoNA: RP021903
- MoNA: RP021911
- MoNA: RP021912
- MoNA: RP021913
- MoNA: VF-NPL-LTQ000234
- MoNA: VF-NPL-LTQ000235
- MoNA: VF-NPL-LTQ000236
- MoNA: VF-NPL-LTQ007747
- MoNA: VF-NPL-LTQ007748
- MoNA: VF-NPL-QEHF028111
- MoNA: VF-NPL-QEHF028112
- MoNA: VF-NPL-QEHF028113
- MoNA: VF-NPL-QEHF028114
- MoNA: VF-NPL-QEHF028115
- MoNA: VF-NPL-QEHF028116
- MoNA: VF-NPL-QEHF028117
- MoNA: VF-NPL-QEHF028118
- MoNA: VF-NPL-QEHF028119
- MoNA: VF-NPL-QEHF028120
- MoNA: VF-NPL-QEHF028121
- MoNA: VF-NPL-QEHF028122
- MoNA: VF-NPL-QEHF028123
- MoNA: VF-NPL-QEHF028124
- MoNA: VF-NPL-QEHF028125
- MoNA: VF-NPL-QTOF006888
- MoNA: VF-NPL-QTOF006889
- MoNA: VF-NPL-QTOF006890
- MoNA: VF-NPL-QTOF006891
- MoNA: VF-NPL-QTOF006892
- MoNA: VF-NPL-QTOF006893
- MoNA: VF-NPL-QTOF006894
- MoNA: VF-NPL-QTOF006895
- Metlin: METLIN_243
- Coconut NaturalProduct: CNP0177348.1
- Coconut NaturalProduct: CNP0177348.3
- Coconut NaturalProduct: CNP0177348.5
- Coconut NaturalProduct: CNP0177348.6
- Coconut NaturalProduct: CNP0177348.7
- Coconut NaturalProduct: CNP0177348.8
- Coconut NaturalProduct: CNP0565242.0
Class / Ontology
- WishartLab ClassyFire: [Biotin and derivatives] Biotin and derivatives
- RefMet: [Biotins] Biotins
- ChEBI: [CHEBI:15956] biotin
- Coconut NaturalProduct: [Carboline alkaloids] Carboline alkaloids
- Coconut NaturalProduct: [Imidazole alkaloids] Imidazole alkaloids
| ID | EC Number | Name |
|---|---|---|
| KEGG:R01074 | 6.2.1.11 | biotin:CoA ligase (AMP-forming); |
| KEGG:R01075 | 6.2.1.11 | biotin:CoA ligase (AMP-forming) |
| KEGG:R01077 | 3.5.1.12 | N6-D-biotinyl-L-lysine amidohydrolase |
| KEGG:R01078 | 2.8.1.6 | dethiobiotin:sulfur sulfurtransferase |
| KEGG:R04562 | 6.3.4.15 | biotin:apo-[acetyl-CoA:carbondioxide ligase (ADP-forming)] ligase (AMP-forming) |
| KEGG:R04563 | 6.3.4.9 | biotin:apo[methylmalonyl-CoA:pyruvate carboxyltransferase] ligase (AMP-forming) |
| KEGG:R04582 | 6.3.4.10 | biotin:apo-[propionyl-CoA:carbon-dioxide ligase (ADP-forming)] |
| KEGG:R04604 | 6.3.4.11 | biotin:apo-[3-methylcrotonoyl-CoA:carbon-dioxide ligase (ADP-forming)] ligase (AMP-forming) |
| KEGG:R10127 | 1.-.-.- | biotin:NADP+ S-oxidoreductase (biotin S-oxide-forming) |
| BioCyc:RXN0-7192 | BIOTIN + ATP + PROTON --> BIO-5-AMP + PPI | |
| BioCyc:BIOTINLIG-RXN | 6.3.4.15 | BCCP-L-lysine + BIOTIN + ATP --> PPI + AMP + BCCP-biotin-L-lysine + PROTON |
| BioCyc:RXN2B79-69 | BIOTIN + ATP + WATER --> BIOTIN + ADP + Pi + PROTON | |
| BioCyc:TRANS-RXN0-240 | BIOTIN --> BIOTIN | |
| BioCyc:RXN-17473 | S-ADENOSYLMETHIONINE + CPD-5662 --> BIOTIN + CH33ADO + MET + PROTON | |
| BioCyc:RXN0-6277 | 1.8.4.- | CPD-722 + Red-Thioredoxin --> BIOTIN + Ox-Thioredoxin + WATER |
| BioCyc:2.8.1.6-RXN | 2.8.1.6 | 2 S-ADENOSYLMETHIONINE + Sulfurated-Sulfur-Acceptors + DETHIOBIOTIN + 2 Reduced-2Fe-2S-Ferredoxins --> Unsulfurated-Sulfur-Acceptors + BIOTIN + 2 CH33ADO + 2 MET + 2 Oxidized-2Fe-2S-Ferredoxins |
| BioCyc:6.3.4.9-RXN | 6.3.4.9 | apo-Transcarboxylases + BIOTIN + ATP --> holo-Transcarboxylases + PPI + AMP |
| BioCyc:6.3.4.10-RXN | 6.3.4.10 | ATP + BIOTIN + Apo-Propionyl-CoA-CO2-ligases --> AMP + PPI + Propionyl-CoA-CO2-ligases |
| BioCyc:BIOTIN--COA-LIGASE-RXN | 6.2.1.11 | CO-A + BIOTIN + ATP --> CPD-203 + PPI + AMP |
| BioCyc:RXN-16474 | 3.5.1.12 | CPD-17700 + WATER --> BIOTIN + LYS |
Taxonomy Source
- Arabidopsis thaliana [ncbi taxid: 3702]
- Artemisia cina [ncbi taxid: 1473222]
- Cassia alata [ncbi taxid: ]
- Escherichia coli [ncbi taxid: 562]
- FOOD SAKE [ncbi taxid: ]
- Unknown-fungus sp. [ncbi taxid: ]