Pyridoxal (BioCAD00000017014)
blood cerebrospinal fluid (csf) feces urine erythrocyte fibroblasts kidney placenta plant natural products microbial natural products
Metabolite Card
Formula: C8H9NO3 (167.0582)
SMILES: CC1=NC=C(CO)C(C=O)=C1O
Synonyms [en]
pyridoxal; 3-hydroxy-5-(hydroxymethyl)-2-methylpyridine-4-carbaldehyde; 3-Hydroxy-5-(hydroxymethyl)-2-methylisonicotinaldehyde; Pyridoxaldehyde; nchembio.93-comp2; Pyridoxal hydrochrolide
Last reviewed on 2024-06-28.
Cite this Page
Pyridoxal. 数据之源,洞见之始. SMRUCC genomics institute, a synthetic life researcher from China.
https://biocad_registry.innovation.ac.cn/s/(-)-arctiin
(retrieved
2026-01-03) (CAD Registry RN: BioCAD00000017014). Licensed
under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).
Note
Pyridoxal is a pyridinecarbaldehyde that is pyridine-4-carbaldehyde bearing methyl, hydroxy and hydroxymethyl substituents at positions 2, 3 and 5 respectively. Pyridoxal, also known as pyridoxaldehyde, belongs to the class of organic compounds known as pyridoxals and derivatives. Pyridoxals and derivatives are compounds containing a pyridoxal moiety, which consists of a pyridine ring substituted at positions 2, 3, 4, and 5 by a methyl group, a hydroxyl group, a carbaldehyde group, and a hydroxymethyl group, respectively. Pyridoxal is one form of vitamin B6. Pyridoxal exists in all living species, ranging from bacteria to humans. In humans, pyridoxal is involved in glycine and serine metabolism. Pyridoxal has been detected, but not quantified in several different foods, such as sourdoughs, lichee, arctic blackberries, watercress, and cottonseeds. Some medically relevant bacteria, such as those in the genera Granulicatella and Abiotrophia, require pyridoxal for growth. This nutritional requirement can lead to the culture phenomenon of satellite growth. In in vitro culture, these pyridoxal-dependent bacteria may only grow in areas surrounding colonies of bacteria from other genera ("satellitism") that are capable of producing pyridoxal. Pridoxal has a role as a cofactor, a human metabolite, a Saccharomyces cerevisiae metabolite, an Escherichia coli metabolite and a mouse metabolite.
DBLinks
- CAS Registry Number: 66-72-8
- PubChem CID: 1050
- ChEBI: 17310
- HMDB: HMDB0001545
- LipidMaps:
- KEGG: C00250
- BioCyc: PYRIDOXAL
- NCBI MeSH: Pyridoxal
- Wikipedia: Pyridoxal
Other DBLinks
- CAS Registry Number: 65-22-5
- CAS Registry Number: 66-72-8
- PubChem: 1050
- ChEBI: ChEBI:17310
- HMDB: HMDB0001545
- KEGG: C00250
- BioCyc: PYRIDOXAL
- NCBI MeSH: Pyridoxal
- Wikipedia: Pyridoxal
- DrugBank: DB00147
- RefMet: RM0156676
- MoNA: BAF_UVA_POS000679
- MoNA: BAF_UVA_POS000680
- MoNA: BAF_UVA_POS000681
- MoNA: BAF_UVA_POS000682
- MoNA: BAF_UVA_POS000993
- MoNA: BML82020
- MoNA: BML82021
- MoNA: BML82022
- MoNA: BML82023
- MoNA: CCMSLIB00000479730
- MoNA: CCMSLIB00000578085
- MoNA: CCMSLIB00005463584
- MoNA: CCMSLIB00005463585
- MoNA: CCMSLIB00005463586
- MoNA: CCMSLIB00005463637
- MoNA: CCMSLIB00005463638
- MoNA: CCMSLIB00005720555
- MoNA: CCMSLIB00005720855
- MoNA: EMBL-MCF_spec155743
- MoNA: EMBL-MCF_spec155785
- MoNA: EMBL-MCF_spec155991
- MoNA: HMDB0001545_c_ms_1511
- MoNA: HMDB0001545_c_ms_1576
- MoNA: HMDB0001545_ms_ms_1643
- MoNA: HMDB0001545_ms_ms_1644
- MoNA: HMDB0001545_ms_ms_1645
- MoNA: KO001576
- MoNA: KO001577
- MoNA: KO001578
- MoNA: KO001579
- MoNA: KO001580
- MoNA: KO003681
- MoNA: KO003682
- MoNA: KO003683
- MoNA: KO003684
- MoNA: KO003685
- MoNA: MoNA011297
- MoNA: MoNA011298
- MoNA: MoNA011299
- MoNA: MoNA011300
- MoNA: MoNA016788
- MoNA: MoNA032478
- MoNA: MoNA032481
- MoNA: MoNA032482
- MoNA: MoNA034570
- MoNA: MoNA034571
- MoNA: MoNA034574
- MoNA: MoNA037319
- MoNA: MoNA038059
- MoNA: PR100275
- MoNA: PR100699
- MoNA: PS049201
- MoNA: PS049202
- MoNA: PS049203
- Metlin: METLIN_2203
- Coconut NaturalProduct: CNP0119632.0
Class / Ontology
- WishartLab ClassyFire: [Pyridine carboxaldehydes] Pyridine carboxaldehydes
- RefMet: [Nicotinic acid alkaloids] Nicotinic acid alkaloids
- ChEBI: [CHEBI:17310] pyridoxal
- Coconut NaturalProduct: [Pyridine alkaloids] Pyridine alkaloids
| ID | EC Number | Name |
|---|---|---|
| KEGG:R00173 | 3.1.3.74 | pyridoxal-5'-phosphate phosphohydrolase |
| KEGG:R00174 | 2.7.1.35 | ATP:pyridoxal 5'-phosphotransferase |
| KEGG:R01707 | 1.1.1.107 | pyridoxal:NAD+ 4-oxidoreductase |
| KEGG:R01708 | 1.1.1.65 | pyridoxine:NADP+ 4-oxidoreductase |
| KEGG:R01709 | 1.2.3.1 | pyridoxal:oxygen 4-oxidoreductase |
| KEGG:R01710 | 1.4.3.5 | pyridoxamine:oxygen oxidoreductase (deaminating) |
| KEGG:R01711 | 1.1.3.12 | pyridoxine:oxygen oxidoreductase (deaminating) |
| KEGG:R01712 | 2.6.1.30 | pyridoxamine:pyruvate aminotransferase |
| KEGG:R01713 | 2.6.1.31 | pyridoxamine:oxaloacetate aminotransferase |
| KEGG:R05839 | 2.6.1.54 | pyridoxamine:2-oxoglutarate aminotransferase |
| BioCyc:TRANS-RXN0-214 | PYRIDOXAL --> PYRIDOXAL | |
| BioCyc:PYROXALTRANSAM-RXN | 2.6.1.31 | PYRIDOXAMINE + OXALACETIC_ACID<=>PYRIDOXAL + L-ASPARTATE |
| BioCyc:3.1.3.74-RXN | 3.1.3.74 | PYRIDOXAL_PHOSPHATE + WATER --> PYRIDOXAL + Pi |
| BioCyc:PYRIDOXINE-4-DEHYDROGENASE-RXN | 1.1.1.65 | NADP + PYRIDOXINE<=>PROTON + NADPH + PYRIDOXAL |
| BioCyc:PYRIDOXKIN-RXN | 2.7.1.35 | ATP + PYRIDOXAL --> PROTON + ADP + PYRIDOXAL_PHOSPHATE |
| Rhea:RHEA:10225 | 2.7.1.35 | pyridoxal + ATP => pyridoxal 5'-phosphate + ADP + H+ |
| Rhea:RHEA:10226 | 2.7.1.35 | pyridoxal 5'-phosphate + ADP + H+ => pyridoxal + ATP |
| Rhea:RHEA:10227 | 2.7.1.35 | pyridoxal + ATP <=> pyridoxal 5'-phosphate + ADP + H+ |
| Rhea:RHEA:10845 | 2.6.1.31 | pyridoxamine + oxaloacetate => pyridoxal + L-aspartate |
| Rhea:RHEA:10846 | 2.6.1.31 | pyridoxal + L-aspartate => pyridoxamine + oxaloacetate |
Taxonomy Source
- Allium sativum [ncbi taxid: 4682]
- Arabidopsis thaliana [ncbi taxid: 3702]
- Citrullus lanatus [ncbi taxid: 3654]
- Escherichia coli [ncbi taxid: 562]
- FOOD SAKE [ncbi taxid: ]
- Homo sapiens [ncbi taxid: 9606]
- Mus musculus [ncbi taxid: 10090]
- Saccharomyces cerevisiae [ncbi taxid: 4932]
Pathway Synthetic
| pathway id | name |
|---|---|
| BioCyc:META_PWY-5920 | superpathway of b heme biosynthesis from glycine |
| BioCyc:META_PWY-5499 | vitamin B6 degradation |
| BioCyc:META_PWY-7204 | pyridoxal 5'-phosphate salvage II (plants) |
| BioCyc:META_PLPSAL-PWY | pyridoxal 5'-phosphate salvage I |
| BioCyc:ECOL199310_PWY0-845 | superpathway of pyridoxal 5'-phosphate biosynthesis and salvage |
| BioCyc:MOUSE_PLPSAL-PWY | pyridoxal 5'-phosphate salvage pathway |
| BioCyc:SMAN_PLPSAL-PWY | pyridoxal 5'-phosphate salvage pathway |
| BioCyc:ECOL316407_PLPSAL-PWY | pyridoxal 5'-phosphate salvage I |
| BioCyc:MOB3B_PWY-5499 | vitamin B6 degradation |
| BioCyc:CLOSSAC_PWY0-845 | superpathway of pyridoxal 5'-phosphate biosynthesis and salvage |
| BioCyc:CLOSSAC_PLPSAL-PWY | pyridoxal 5'-phosphate salvage pathway |
| BioCyc:LACTORHA_PLPSAL-PWY | pyridoxal 5'-phosphate salvage I |
| BioCyc:META_PWY-5529 | superpathway of bacteriochlorophyll a biosynthesis |
| BioCyc:META_PWY0-845 | superpathway of pyridoxal 5'-phosphate biosynthesis and salvage |
| BioCyc:ARA_PLPSAL-PWY | pyridoxal 5'-phosphate salvage I |
| BioCyc:ARA_PWY-7204 | pyridoxal 5'-phosphate salvage II (plants) |
| BioCyc:TRYPANO_PYRIDOXAMINEANABOLISM | pyridoxamine anabolism |
| BioCyc:PLASMO_PLPSAL-PWY | pyridoxal 5'-phosphate salvage pathway |
| BioCyc:ECOO157_PLPSAL-PWY | pyridoxal 5'-phosphate salvage I |
| BioCyc:ECOO157_PWY0-845 | superpathway of pyridoxal 5'-phosphate biosynthesis and salvage |