superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass

Metabolites

Allicin

Formula: C6H10OS2 (162.01730500000002)

CAS ID: 539-86-6

Cadmium

Formula: Cd (113.903361)

CAS ID: 7440-43-9

Calcium cation

Formula: Ca (39.962591)

CAS ID: 14127-61-8

Carboxin

Formula: C12H13NO2S (235.06669580000002)

CAS ID: 5234-68-4

Cl-

Formula: Cl (34.968853)

CAS ID: 16887-00-6

CO2

Formula: CO2 (43.98983)

CAS ID: 124-38-9

D-Glucose 6-phosphate

Formula: C6H13O9P (260.0297178)

CAS ID: 56-73-5

Dithiothreitol

Formula: C4H10O2S2 (154.01222)

CAS ID: 3483-12-3

Fluoride

Formula: F (18.9984032)

CAS ID: 7782-41-4

H+

Formula: H (1.0078246)

CAS ID: 12408-02-5

H2O

Formula: H2O (18.0105642)

CAS ID: 7732-18-5

Lithium

Formula: Li (7.016005)

CAS ID: 7439-93-2

Magnesium cation

Formula: Mg (23.98505)

CAS ID: 22537-22-0

Manganese(2+)

Formula: Mn (54.938046)

CAS ID: 7439-96-5

Mercury(2+)

Formula: Hg (201.970632)

CAS ID: 14302-87-5

Nickel(2+)

Formula: Ni (57.935347)

CAS ID: 14701-22-5

Potassium cation

Formula: K (38.963708)

CAS ID: 24203-36-9

Silver

Formula: Ag (106.905095)

CAS ID: 7440-22-4

Sulfate

Formula: H2SO4 (97.9673812)

CAS ID: 7664-93-9

Superoxide

Formula: O2 (31.98983)

CAS ID: 11062-77-4

Zinc cation

Formula: Zn (63.929145)

CAS ID: 23713-49-7

Ubiquinone-1

Formula: C14H18O4 (250.1205028)

CAS ID: 727-81-1

QH(2)

Formula: C14H20O4 (252.136152)

CAS ID: 52590-98-4

Phenylglyoxal

Formula: C8H6O2 (134.0367776)

CAS ID: 1074-12-0

Potassium chloride

Formula: ClK (73.93256099999999)

CAS ID: 7447-40-7

malonate(2-)

Formula: C3H2O4 (101.99530920000001)

CAS ID: 156-80-9

oxaloacetate(2-)

Formula: C4H2O5 (129.9902242)

CAS ID: 149-63-3

2-oxoglutarate(2-)

Formula: C5H4O5 (144.00587339999998)

CAS ID: 64-15-3

succinate(2-)

Formula: C4H4O4 (116.01095839999999)

CAS ID: 56-14-4

butenedioate

Formula: C4H2O4 (113.99530920000001)

CAS ID: 17013-01-3

oxalate(2-)

Formula: C2O4 (87.97966)

CAS ID: 338-70-5

glycolate

Formula: C2H3O3 (75.00821880000001)

CAS ID: 666-14-8

pyruvate

Formula: C3H3O3 (87.00821880000001)

CAS ID: 57-60-3

3-bromopyruvate

Formula: C3H2BrO3 (164.9187302)

CAS ID: 68-38-2

glyoxylate

Formula: C2HO3 (72.9925696)

CAS ID:

citrate(3-)

Formula: C6H5O7 (189.00352800000002)

CAS ID: 126-44-3

3-oxalomalate(3-)

Formula: C6H3O8 (202.98279380000002)

CAS ID: 89304-26-7

tellurite

Formula: O3Te (177.890974)

CAS ID: 15852-22-9

tungstate

Formula: O4W (247.930613)

CAS ID: 14311-52-5

NADPH(4-)

Formula: C21H26N7O17P3 (741.0598016)

CAS ID: 53-57-6

ATP(4-)

Formula: C10H12N5O13P3 (502.9644492)

CAS ID:

NAD(1-)

Formula: C21H26N7O14P2 (662.1012936000001)

CAS ID: 53-84-9

ADP(3-)

Formula: C10H12N5O10P2 (424.0059412)

CAS ID:

NADP(3-)

Formula: C21H25N7O17P3 (740.051977)

CAS ID: 53-59-8

borohydride

Formula: BH4 (15.040603399999998)

CAS ID: 16971-29-2



Enzyme

EC Number name full name note
1.1.1.37 malate dehydrogenase (S)-malate:NAD+ oxidoreductase
1.1.1.42 isocitrate dehydrogenase (NADP+) isocitrate:NADP+ oxidoreductase (decarboxylating)
1.1.5.4 malate dehydrogenase (quinone) (S)-malate:quinone oxidoreductase
1.2.1.12 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) D-glyceraldehyde-3-phosphate:NAD+ oxidoreductase (phosphorylating)
1.2.4.1 pyruvate dehydrogenase (acetyl-transferring) pyruvate:[dihydrolipoyllysine-residue acetyltransferase]-lipoyllysine 2-oxidoreductase (decarboxylating, acceptor-acetylating)
1.2.4.2 oxoglutarate dehydrogenase (succinyl-transferring) 2-oxoglutarate:[dihydrolipoyllysine-residue succinyltransferase]-lipoyllysine 2-oxidoreductase (decarboxylating, acceptor-succinylating)
1.3.5.1 succinate dehydrogenase succinate:quinone oxidoreductase
1.8.1.4 dihydrolipoyl dehydrogenase protein-N6-(dihydrolipoyl)lysine:NAD+ oxidoreductase
2.3.1.12 dihydrolipoyllysine-residue acetyltransferase acetyl-CoA:enzyme N6-(dihydrolipoyl)lysine S-acetyltransferase
2.3.1.61 dihydrolipoyllysine-residue succinyltransferase succinyl-CoA:enzyme-N6-(dihydrolipoyl)lysine S-succinyltransferase
2.3.3.16 citrate synthase (unknown stereospecificity) acetyl-CoA:oxaloacetate C-acetyltransferase (thioester-hydrolysing)
2.3.3.9 malate synthase acetyl-CoA:glyoxylate C-acetyltransferase (thioester-hydrolysing, carboxymethyl-forming)
2.7.1.11 6-phosphofructokinase ATP:D-fructose-6-phosphate 1-phosphotransferase
2.7.1.40 pyruvate kinase ATP:pyruvate 2-O-phosphotransferase
2.7.2.3 phosphoglycerate kinase ATP:3-phospho-D-glycerate 1-phosphotransferase
2.7.9.2 pyruvate, water dikinase ATP:pyruvate,water phosphotransferase
3.1.3.11 fructose-bisphosphatase D-fructose-1,6-bisphosphate 1-phosphohydrolase
3.1.3.74 pyridoxal phosphatase pyridoxal-5'-phosphate phosphohydrolase
4.1.2.13 fructose-bisphosphate aldolase D-fructose-1,6-bisphosphate D-glyceraldehyde-3-phosphate-lyase (glycerone-phosphate-forming)
4.1.3.1 isocitrate lyase isocitrate glyoxylate-lyase (succinate-forming)
4.2.1.11 phosphopyruvate hydratase 2-phospho-D-glycerate hydro-lyase (phosphoenolpyruvate-forming)
4.2.1.2 fumarate hydratase (S)-malate hydro-lyase (fumarate-forming)
4.2.1.3 aconitate hydratase citrate(isocitrate) hydro-lyase (cis-aconitate-forming)
4.2.1.81 D(-)-tartrate dehydratase (S,S)-tartrate hydro-lyase (oxaloacetate-forming)
4.2.1.99 2-methylisocitrate dehydratase (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate hydro-lyase [(Z)-but-2-ene-1,2,3-tricarboxylate-forming]
5.3.1.1 triose-phosphate isomerase D-glyceraldehyde-3-phosphate aldose-ketose-isomerase
5.3.1.9 glucose-6-phosphate isomerase alpha-D-glucose-6-phosphate aldose-ketose-isomerase (configuration-inverting)
5.3.2.2 oxaloacetate tautomerase oxaloacetate keto---enol-isomerase
5.4.2.11 phosphoglycerate mutase (2,3-diphosphoglycerate-dependent) D-phosphoglycerate 2,3-phosphomutase (2,3-diphosphoglycerate-dependent)
5.4.2.12 phosphoglycerate mutase (2,3-diphosphoglycerate-independent) D-phosphoglycerate 2,3-phosphomutase (2,3-diphosphoglycerate-independent)
6.2.1.5 succinate-CoA ligase (ADP-forming) succinate:CoA ligase (ADP-forming)


Proteins

Protein ID name full name
P05042 fumC Fumarate hydratase class II
P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
P06999 pfkB ATP-dependent 6-phosphofructokinase isozyme 2
P07014 sdhB Succinate dehydrogenase iron-sulfur subunit
P08200 icd Isocitrate dehydrogenase [NADP]
P08997 aceB Malate synthase A
P0A6P9 eno Enolase
P0A6T1 pgi Glucose-6-phosphate isomerase
P0A796 pfkA ATP-dependent 6-phosphofructokinase isozyme 1
P0A799 pgk Phosphoglycerate kinase
P0A836 sucC Succinate--CoA ligase [ADP-forming] subunit beta
P0A858 tpiA Triosephosphate isomerase
P0A991 fbaB Fructose-bisphosphate aldolase class 1
P0A993 fbp Fructose-1,6-bisphosphatase class 1
P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A
P0A9C9 glpX Fructose-1,6-bisphosphatase 1 class 2
P0A9G6 aceA Isocitrate lyase
P0A9P0 lpdA Dihydrolipoyl dehydrogenase
P0AB71 fbaA Fructose-bisphosphate aldolase class 2
P0ABH7 gltA Citrate synthase
P0AC33 fumA Fumarate hydratase class I, aerobic
P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit
P0ACX5 fumD Fumarase D
P0AD61 pykF Pyruvate kinase I
P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component
P0AFG6 sucB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex
P0AFG8 aceE Pyruvate dehydrogenase E1 component
P0AGE9 sucD Succinate--CoA ligase [ADP-forming] subunit alpha
P11663 fumE Fumarase E
P14407 fumB Fumarate hydratase class I, anaerobic
P21437 yggF Fructose-1,6-bisphosphatase 2 class 2
P21599 pykA Pyruvate kinase II
P21829 ybhA Pyridoxal phosphate phosphatase YbhA
P23538 ppsA Phosphoenolpyruvate synthase
P25516 acnA Aconitate hydratase A
P33940 mqo Malate:quinone oxidoreductase
P36683 acnB Aconitate hydratase B
P37689 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
P61889 mdh Malate dehydrogenase
P62707 gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase