Metabolism of proteins

Agassandian M, Mallampalli RK. Surfactant phospholipid metabolism. Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids. 2013 Mar;1831(3):612–25. doi: 10.1016/j.bbalip.2012.09.010.; Knorre DG, Kudryashova NV, Godovikova TS. Chemical and Functional Aspects of Posttranslational Modification of Proteins. Acta Naturae. 2009 Dec 15;1(3):29–51. doi: 10.32607/20758251-2009-1-3-29-51.; Kutik S, Guiard B, Meyer HE, Wiedemann N, Pfanner N. Cooperation of translocase complexes in mitochondrial protein import. J Cell Biol. 2007 Nov 19;179(4):585–91. PMID: 17998403; PMCID: PMC2080918.; Chertow BS. The role of lysosomes and proteases in hormone secretion and degradation. Endocr Rev. 1981;2(2):137–73. doi: 10.1210/edrv-2-2-137. PMID: 6117463.

Metabolites

5'-Deoxyadenosine

Formula: C10H13N5O3 (251.10183480000003)

CAS ID: 4754-39-6

Acetate

Formula: C2H4O2 (60.0211284)

CAS ID: 64-19-7

Acetylcholine

Formula: C7H16NO2 (146.1180976)

CAS ID: 51-84-3

Adenosine

Formula: C10H13N5O4 (267.09674980000005)

CAS ID: 58-61-7

Ammonia

Formula: NH3 (17.0265478)

CAS ID: 7664-41-7

beta-L-Fucopyranose

Formula: C6H12O5 (164.06847019999998)

CAS ID: 13224-93-6

Calcium cation

Formula: Ca (39.962591)

CAS ID: 14127-61-8

Cl-

Formula: Cl (34.968853)

CAS ID: 16887-00-6

CO2

Formula: CO2 (43.98983)

CAS ID: 124-38-9

D-Glucose

Formula: C6H12O6 (180.0633852)

CAS ID: 50-99-7

D-Mannose

Formula: C6H12O6 (180.0633852)

CAS ID: 3458-28-4

Fe2+

Formula: Fe (55.934939)

CAS ID: 15438-31-0

Fe3+

Formula: Fe (55.934939)

CAS ID: 7439-89-6

H+

Formula: H (1.0078246)

CAS ID: 12408-02-5

H2O

Formula: H2O (18.0105642)

CAS ID: 7732-18-5

Hydrogen peroxide

Formula: H2O2 (34.0054792)

CAS ID: 7722-84-1

L-Methionine (R)-S-oxide

Formula: C5H11NO3S (165.0459616)

CAS ID: 62697-73-8

Magnesium cation

Formula: Mg (23.98505)

CAS ID: 22537-22-0

Manganese(2+)

Formula: Mn (54.938046)

CAS ID: 7439-96-5

N-Methyl-D-aspartic acid

Formula: C5H9NO4 (147.0531554)

CAS ID: 6384-92-5

Octanoic acid

Formula: C8H16O2 (144.1150236)

CAS ID: 124-07-2

Oxygen

Formula: O2 (31.98983)

CAS ID: 7782-44-7

Sodium cation

Formula: Na (22.98977)

CAS ID: 17341-25-2

Zinc cation

Formula: Zn (63.929145)

CAS ID: 23713-49-7

2-oxoglutarate(2-)

Formula: C5H4O5 (144.00587339999998)

CAS ID: 64-15-3

succinate(2-)

Formula: C4H4O4 (116.01095839999999)

CAS ID: 56-14-4

pyruvate

Formula: C3H3O3 (87.00821880000001)

CAS ID: 57-60-3

decanoate

Formula: C10H19O2 (171.1384974)

CAS ID: 3398-75-2

cholate

Formula: C24H39O5 (407.2797344)

CAS ID: 298-43-1

palmitoyl-CoA(4-)

Formula: C37H62N7O17P3S (1001.3135592)

CAS ID: 1763-10-6

NADPH(4-)

Formula: C21H26N7O17P3 (741.0598016)

CAS ID: 53-57-6

ATP(4-)

Formula: C10H12N5O13P3 (502.9644492)

CAS ID:

GTP(4-)

Formula: C10H12N5O14P3 (518.9593642)

CAS ID: 86527-72-2

NAD(1-)

Formula: C21H26N7O14P2 (662.1012936000001)

CAS ID: 53-84-9

UDP(3-)

Formula: C9H11N2O12P2 (400.9787246)

CAS ID: 86527-70-0

ADP(3-)

Formula: C10H12N5O10P2 (424.0059412)

CAS ID:

NADP(3-)

Formula: C21H25N7O17P3 (740.051977)

CAS ID: 53-59-8

L-lysinium(1+)

Formula: C6H15N2O2 (147.113347)

CAS ID: 56-87-1

hydrosulfide

Formula: HS (32.979896600000004)

CAS ID: 15035-72-0



Enzyme

EC Number name full name note
2.1.1.-
1.14.99.29 deoxyhypusine monooxygenase deoxyhypusine,hydrogen-donor:oxygen oxidoreductase (2-hydroxylating)
2.3.2.27 RING-type E3 ubiquitin transferase [E2 ubiquitin-conjugating enzyme]-S-ubiquitinyl-L-cysteine:[acceptor protein] ubiquitin transferase (isopeptide bond-forming; RING-type)
2.3.2.34 E2 NEDD8-conjugating enzyme [E1 NEDD8-activating enzyme]-S-[NEDD8 protein]-yl-L-cysteine:[E2 NEDD8-conjugating enzyme] [NEDD8-protein]-yl transferase
2.4.1.122 N-acetylgalactosaminide beta-1,3-galactosyltransferase UDP-alpha-D-galactose:N-acetyl-alpha-D-galactosaminyl-R beta-1,3-galactosyltransferase (configuration-inverting)
2.4.1.267 dolichyl-P-Glc:Man9GlcNAc2-PP-dolichol alpha-1,3-glucosyltransferase dolichyl beta-D-glucosyl phosphate: D-Man-alpha-(1->2)-D-Man-alpha-(1->2)-D-Man-alpha-(1->3)-[D-Man-alpha-(1->2)-D-Man-alpha-(1->3)-[D-Man-alpha-(1->2)-D-Man-alpha-(1->6)]-D-Man-alpha-(1->6)]-D-Man-beta-(1->4)-D-GlcNAc-beta-(1->4)-D-GlcNAc-diphosphodolichol alpha-1,3-mannosyltransferase
2.4.1.312 protein O-mannose beta-1,4-N-acetylglucosaminyltransferase UDP-N-acetyl-alpha-D-glucosamine:alpha-D-mannosyl-threonyl-[protein] 4-beta-N-acetyl-D-glucosaminyltransferase
2.4.3.1 beta-galactoside alpha-(2,6)-sialyltransferase CMP-N-acetyl-beta-neuraminate:beta-D-galactoside alpha-(2->6)-N-acetylneuraminyltransferase (configuration-inverting)
3.4.19.12 ubiquitinyl hydrolase 1
3.4.21.6 coagulation factor Xa
3.5.1.98 histone deacetylase histone amidohydrolase
5.3.4.1 protein disulfide-isomerase Protein disulfide-isomerase
5.6.2.4 DNA 3'-5' helicase DNA 3'-5' helicase (ATP-hydrolysing)


Proteins

Protein ID name full name