Pathways Knowlegdes
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| Pathway | DOIs | Note |
|---|---|---|
| N-acetylglucosamine degradation II Accession ID: BioCyc:HUMAN_PWY-6517 |
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| N-acetylneuraminate and N-acetylmannosamine degradation II Accession ID: BioCyc:META_PWY-7581 |
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Brigham C, Caughlan R, Gallegos R, Dallas MB, Godoy VG, Malamy MH. Sialic Acid ( N -Acetyl Neuraminic Acid) Utilization by Bacteroides fragilis Requires a Novel N -Acetyl Mannosamine Epimerase. J Bacteriol. 2009 Jun;191(11):3629–38. doi: 10.1128/jb.00811-08. |
| chitin derivatives degradation Accession ID: BioCyc:META_PWY-6906 |
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Hunt DE, Gevers D, Vahora NM, Polz MF. Conservation of the chitin utilization pathway in the Vibrionaceae. Appl Environ Microbiol. 2008 Jan;74(1):44–51. PMID: 17933912; PMCID: PMC2223224.; Park JK, Wang LX, Roseman S. Isolation of a glucosamine-specific kinase, a unique enzyme of Vibrio cholerae. J Biol Chem. 2002 May 03;277(18):15573–8. doi: 10.1074/jbc.m107953200. PMID: 11850417. |
| chitin degradation II (Vibrio) Accession ID: BioCyc:ARA_PWY-6902 |
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| chitin degradation II Accession ID: BioCyc:THAPS_PWY-6902 |
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| chitin degradation II (Vibrio) Accession ID: BioCyc:META_PWY-6902 |
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Hunt DE, Gevers D, Vahora NM, Polz MF. Conservation of the chitin utilization pathway in the Vibrionaceae. Appl Environ Microbiol. 2008 Jan;74(1):44–51. PMID: 17933912; PMCID: PMC2223224.; Park JK, Wang LX, Roseman S. Isolation of a glucosamine-specific kinase, a unique enzyme of Vibrio cholerae. J Biol Chem. 2002 May 03;277(18):15573–8. doi: 10.1074/jbc.m107953200. PMID: 11850417.; Keyhani NO, Roseman S. The chitin catabolic cascade in the marine bacterium Vibrio furnissii. Molecular cloning, isolation, and characterization of a periplasmic beta-N-acetylglucosaminidase. J Biol Chem. 1996 Dec 27;271(52):33425–32. doi: 10.1074/jbc.271.52.33425. PMID: 8969205. |
| β-1,4-D-mannosyl-N-acetyl-D-glucosamine degradation Accession ID: BioCyc:META_PWY-7586 |
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Nihira T, Suzuki E, Kitaoka M, Nishimoto M, Ohtsubo K, Nakai H. Discovery of ß-1,4-d-Mannosyl-N-acetyl-d-glucosamine Phosphorylase Involved in the Metabolism of N-Glycans. Journal of Biological Chemistry. 2013 Sep;288(38):27366–74. doi: 10.1074/jbc.m113.469080. |
| N-acetylglucosamine degradation II Accession ID: BioCyc:AGRO_PWY-6517 |
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| chitin degradation II Accession ID: BioCyc:BTHE_PWY-6902 |
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| N-acetylglucosamine degradation II Accession ID: BioCyc:META_PWY-6517 |
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Boulanger A, De´jean G, Lautier M, Glories M, Zischek C, Arlat M, Lauber E. Identification and Regulation of the N -Acetylglucosamine Utilization Pathway of the Plant Pathogenic Bacterium Xanthomonas campestris pv. campestris. J Bacteriol. 2010 Mar 15;192(6):1487–97. doi: 10.1128/jb.01418-09. |
| chitin degradation III (Serratia) Accession ID: BioCyc:META_PWY-7822 |
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Vaaje-Kolstad G, Horn SJ, Sørlie M, Eijsink VGH. The chitinolytic machinery of |
| chitin degradation II (Vibrio) Accession ID: BioCyc:VCHO_PWY-6902 |
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| chitin derivatives degradation Accession ID: BioCyc:THAPS_PWY-6906 |
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| N-acetylglucosamine degradation II Accession ID: BioCyc:PDIF272563_PWY-6517 |
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| chitin degradation II Accession ID: BioCyc:LACTORHA_PWY-6902 |
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| chitin degradation I (archaea) Accession ID: BioCyc:META_PWY-6855 |
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Ohnuma T, Numata T, Osawa T, Mizuhara M, Lampela O, Juffer AH, Skriver K, Fukamizo T. A class V chitinase from Arabidopsis thaliana: gene responses, enzymatic properties, and crystallographic analysis. Planta. 2011 Jul;234(1):123–37. doi: 10.1007/s00425-011-1390-3. PMID: 21390509.; Young VL, Simpson RM, Ward VK. Characterization of an exochitinase from Epiphyas postvittana nucleopolyhedrovirus (family Baculoviridae). J Gen Virol. 2005 Dec;86(Pt 12):3253–61. doi: 10.1099/vir.0.81262-0. PMID: 16298970.; Tanaka T, Takahashi F, Fukui T, Fujiwara S, Atomi H, Imanaka T. Characterization of a Novel Glucosamine-6-Phosphate Deaminase from a Hyperthermophilic Archaeon. J Bacteriol. 2005 Oct 15;187(20):7038–44. doi: 10.1128/jb.187.20.7038-7044.2005.; Tanaka T, Fukui T, Fujiwara S, Atomi H, Imanaka T. Concerted action of diacetylchitobiose deacetylase and exo-beta-D-glucosaminidase in a novel chitinolytic pathway in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1. J Biol Chem. 2004 Jul 16;279(29):30021–7. doi: 10.1074/jbc.m314187200. PMID: 15136574.; Tanaka T, Fukui T, Atomi H, Imanaka T. Characterization of an Exo-ß- |
| hyaluronan degradation Accession ID: BioCyc:META_PWY-7645 |
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Maruyama Y, Nakamichi Y, Itoh T, Mikami B, Hashimoto W, Murata K. Substrate Specificity of Streptococcal Unsaturated Glucuronyl Hydrolases for Sulfated Glycosaminoglycan. Journal of Biological Chemistry. 2009 Jul;284(27):18059–69. doi: 10.1074/jbc.m109.005660.; Itoh T, Hashimoto W, Mikami B, Murata K. Substrate recognition by unsaturated glucuronyl hydrolase from Bacillus sp. GL1. Biochemical and Biophysical Research Communications. 2006 May;344(1):253–62. doi: 10.1016/j.bbrc.2006.03.141.; Itoh T, Akao S, Hashimoto W, Mikami B, Murata K. Crystal Structure of Unsaturated Glucuronyl Hydrolase, Responsible for the Degradation of Glycosaminoglycan, from Bacillus sp. GL1 at 1.8 Å Resolution. Journal of Biological Chemistry. 2004 Jul;279(30):31804–12. doi: 10.1074/jbc.m403288200.; Hashimoto W, Kobayashi E, Nankai H, Sato N, Miya T, Kawai S, Murata K. Unsaturated Glucuronyl Hydrolase of Bacillus sp. GL1: Novel Enzyme Prerequisite for Metabolism of Unsaturated Oligosaccharides Produced by Polysaccharide Lyases. Archives of Biochemistry and Biophysics. 1999 Aug;368(2):367–74. doi: 10.1006/abbi.1999.1305.; Dietrich CP, Silva ME, Michelacci YM. Sequential degradation of heparin in Flavobacterium heparinum. Purification and properties of five enzymes involved in heparin degradation. J Biol Chem. 1973 Sep 25;248(18):6408–15. PMID: 4730325. |
| chitin degradation II (Vibrio) Accession ID: BioCyc:MTBH37RV_PWY-6902 |
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| chitin degradation II Accession ID: BioCyc:ANTHRA_PWY-6902 |
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| chitin degradation II (Vibrio) Accession ID: BioCyc:PDIF272563_PWY-6902 |
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