Pathways Knowlegdes

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Pathway DOIs Note
superpathway of chorismate metabolism

Accession ID: BioCyc:ECOL316407_ALL-CHORISMATE-PWY		 -
superpathway of tetrahydrofolate biosynthesis

Accession ID: BioCyc:MOB3B_PWY-6612		 -
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I

Accession ID: BioCyc:THAPS_PWY-6147		 -
superpathway of tetrahydrofolate biosynthesis

Accession ID: BioCyc:PDIF272563_PWY-6612		 -
6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)

Accession ID: BioCyc:MSMI420247_PWY-6797		 -
superpathway of tetrahydrofolate biosynthesis

Accession ID: BioCyc:META_PWY-6612		 -
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I

Accession ID: BioCyc:YEAST_PWY-6147		 -
tetrahydrofolate biosynthesis II

Accession ID: BioCyc:ARA_PWY-3742
  • 10.1006/bbrc.1996.1608
  • 10.1016/j.jmb.2004.04.034
  • 10.1016/s0031-9422(96)00833-3
  • 10.1016/s1360-1385(00)01599-5
  • 10.1016/s1369-5266(02)00249-2
  • 10.1073/pnas.0308331100
  • 10.1073/pnas.261585098
  • 10.1074/jbc.m302894200
  • 10.1096/fasebj.5.12.1916088
  • 10.1104/pp.016915
  • 10.1104/pp.103.038430
  • 10.1111/j.1365-313x.2004.02231.x
  • 10.1146/annurev.arplant.52.1.119
 Basset GJC, Ravanel S, Quinlivan EP, White R, Giovannoni JJ, Rébeillé F, Nichols BP, Shinozaki K, Seki M, Gregory JF, Hanson AD. Folate synthesis in plants: the last step of the p-aminobenzoate branch is catalyzed by a plastidial aminodeoxychorismate lyase. The Plant Journal. 2004 Sep 27;40(4):453–61. doi: 10.1111/j.1365-313x.2004.02231.x.; Bauer S, Schott AK, Illarionova V, Bacher A, Huber R, Fischer M. Biosynthesis of tetrahydrofolate in plants: crystal structure of 7,8-dihydroneopterin aldolase from Arabidopsis thaliana reveals a novel adolase class. J Mol Biol. 2004 Jun 11;339(4):967–79. doi: 10.1016/j.jmb.2004.04.034. PMID: 15165863.; Goyer A, Illarionova V, Roje S, Fischer M, Bacher A, Hanson AD. Folate biosynthesis in higher plants. cDNA cloning, heterologous expression, and characterization of dihydroneopterin aldolases. Plant Physiol. 2004 May;135(1):103–11. PMID: 15107504; PMCID: PMC429337.; Basset GJC, Quinlivan EP, Ravanel S, Rébeillé F, Nichols BP, Shinozaki K, Seki M, Adams-Phillips LC, Giovannoni JJ, Gregory JF, Hanson AD. Folate synthesis in plants: The p -aminobenzoate branch is initiated by a bifunctional PabA-PabB protein that is targeted to plastids. Proc. Natl. Acad. Sci. U.S.A. 2004 Jan 26;101(6):1496–501. doi: 10.1073/pnas.0308331100.; Quinlivan EP, Roje S, Basset G, Shachar-Hill Y, Gregory JF, Hanson AD. The Folate Precursor p-Aminobenzoate Is Reversibly Converted to Its Glucose Ester in the Plant Cytosol. Journal of Biological Chemistry. 2003 Jun;278(23):20731–7. doi: 10.1074/jbc.m302894200.; Jabrin S, Ravanel S, Gambonnet B, Douce R, Rébeillé F. One-carbon metabolism in plants. Regulation of tetrahydrofolate synthesis during germination and seedling development. Plant Physiol. 2003 Mar;131(3):1431–9. PMID: 12644692; PMCID: PMC166902.; Hanson AD, Gregory III JF. Synthesis and turnover of folates in plants. Current Opinion in Plant Biology. 2002 Jun;5(3):244–9. doi: 10.1016/s1369-5266(02)00249-2.; Ravanel S, Cherest H, Jabrin S, Grunwald D, Surdin-Kerjan Y, Douce R, Rébeillé F. Tetrahydrofolate biosynthesis in plants: Molecular and functional characterization of dihydrofolate synthetase and three isoforms of folylpolyglutamate synthetase in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 2001 Dec 18;98(26):15360–5. doi: 10.1073/pnas.261585098.; Hanson AD, Roje S. ONE-CARBONMETABOLISM INHIGHERPLANTS. Annu. Rev. Plant. Physiol. Plant. Mol. Biol. 2001 Jun;52(1):119–37. doi: 10.1146/annurev.arplant.52.1.119.; Hanson AD, Gage DA, Shachar-Hill Y. Plant one-carbon metabolism and its engineering. Trends Plant Sci. 2000 May;5(5):206–13. doi: 10.1016/s1360-1385(00)01599-5. PMID: 10785666.; Cossins EA, Chen L. Folates and one-carbon metabolism in plants and fungi. Phytochemistry. 1997 Jun;45(3):437–52. doi: 10.1016/s0031-9422(96)00833-3. PMID: 9190084.; Huangpu J, Pak JH, Graham MC, Rickle SA, Graham JS. Purification and Molecular Analysis of an Extracellular ?-Glutamyl Hydrolase Present in Young Tissues of the Soybean Plant. Biochemical and Biophysical Research Communications. 1996 Nov;228(1):1–6. doi: 10.1006/bbrc.1996.1608.; Appling DR. Compartmentation of folate-mediated one-carbon metabolism in eukaryotes. FASEB J. 1991 Sep;5(12):2645–51. doi: 10.1096/fasebj.5.12.1916088. PMID: 1916088.
superpathway of chorismate metabolism

Accession ID: BioCyc:VCHO_ALL-CHORISMATE-PWY		 -
6-hydroxymethyl-dihydropterin diphosphate biosynthesis

Accession ID: BioCyc:PLASMO_PWY-6147		 -
superpathway of tetrahydrofolate biosynthesis

Accession ID: BioCyc:PLASMO_PWY-6612		 -
superpathway of tetrahydrofolate biosynthesis and salvage

Accession ID: BioCyc:MTBH37RV_FOLSYN-PWY		 -
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I

Accession ID: BioCyc:MTBCDC1551_PWY-6147		 -
superpathway of tetrahydrofolate biosynthesis and salvage

Accession ID: BioCyc:ECOO157_FOLSYN-PWY		 -
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I

Accession ID: BioCyc:ECOL199310_PWY-6147		 -
superpathway of tetrahydrofolate biosynthesis and salvage

Accession ID: BioCyc:ECOL199310_FOLSYN-PWY		 -
superpathway of tetrahydrofolate biosynthesis and salvage

Accession ID: BioCyc:CAULO_FOLSYN-PWY		 -
superpathway of tetrahydrofolate biosynthesis and salvage

Accession ID: BioCyc:ANTHRA_FOLSYN-PWY		 -
superpathway of tetrahydrofolate biosynthesis and salvage

Accession ID: BioCyc:AGRO_FOLSYN-PWY		 -
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I

Accession ID: BioCyc:BSUB_PWY-6147		 -