Pathways Knowlegdes

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Pathway DOIs Note
6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (Methanocaldococcus)

Accession ID: BioCyc:META_PWY-6797
  • 10.1021/bi9010336
  • 10.1021/cb300342u
 Crécy-Lagard VD, Phillips G, Grochowski LL, Yacoubi BE, Jenney F, Adams MWW, Murzin AG, White RH. Comparative Genomics Guided Discovery of Two Missing Archaeal Enzyme Families Involved in the Biosynthesis of the Pterin Moiety of Tetrahydromethanopterin and Tetrahydrofolate. ACS Chem. Biol. 2012 Sep 07;7(11):1807–16. doi: 10.1021/cb300342u.; Mashhadi Z, Xu H, White RH. An Fe2+-Dependent Cyclic Phosphodiesterase Catalyzes the Hydrolysis of 7,8-Dihydro-d-neopterin 2',3'-Cyclic Phosphate in Methanopterin Biosynthesis. Biochemistry. 2009 Sep 21;48(40):9384–92. doi: 10.1021/bi9010336.
superpathway of chorismate metabolism

Accession ID: BioCyc:META_ALL-CHORISMATE-PWY
  • 10.1021/bi0016523
 Keating TA, Marshall CG, Walsh CT. Reconstitution and characterization of the Vibrio cholerae vibriobactin synthetase from VibB, VibE, VibF, and VibH. Biochemistry. 2000 Dec 19;39(50):15522–30. doi: 10.1021/bi0016523. PMID: 11112538.
superpathway of tetrahydrofolate biosynthesis

Accession ID: BioCyc:ECO_PWY-6612		 -
superpathway of tetrahydrofolate biosynthesis and salvage

Accession ID: BioCyc:YEAST_FOLSYN-PWY		 -
superpathway of tetrahydrofolate biosynthesis

Accession ID: BioCyc:ARA_PWY-6612		 -
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I

Accession ID: BioCyc:ARA_PWY-6147
  • 10.1073/pnas.192278499
 Basset G, Quinlivan EP, Ziemak MJ, Diaz De La Garza R, Fischer M, Schiffmann S, Bacher A, Gregory JF, Hanson AD. Folate synthesis in plants: the first step of the pterin branch is mediated by a unique bimodular GTP cyclohydrolase I. Proc Natl Acad Sci U S A. 2002 Sep 17;99(19):12489–94. PMID: 12221287; PMCID: PMC129472.
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I

Accession ID: BioCyc:VCHO_PWY-6147		 -
superpathway of tetrahydrofolate biosynthesis and salvage

Accession ID: BioCyc:VCHO_FOLSYN-PWY		 -
tetrahydrofolate biosynthesis II

Accession ID: BioCyc:PLASMO_PWY-3742		 -
superpathway of tetrahydrofolate biosynthesis and salvage

Accession ID: BioCyc:PLASMO_FOLSYN-PWY		 -
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I

Accession ID: BioCyc:MTBH37RV_PWY-6147		 -
superpathway of tetrahydrofolate biosynthesis

Accession ID: BioCyc:MTBH37RV_PWY-6612		 -
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I

Accession ID: BioCyc:ECOO157_PWY-6147		 -
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I

Accession ID: BioCyc:CAULO_PWY-6147		 -
superpathway of tetrahydrofolate biosynthesis

Accession ID: BioCyc:CAULO_PWY-6612		 -
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I

Accession ID: BioCyc:AGRO_PWY-6147		 -
superpathway of tetrahydrofolate biosynthesis and salvage

Accession ID: BioCyc:SCO_FOLSYN-PWY		 -
superpathway of tetrahydrofolate biosynthesis

Accession ID: BioCyc:SCO_PWY-6612		 -
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I

Accession ID: BioCyc:SCO_PWY-6147		 -
superpathway of chorismate metabolism

Accession ID: BioCyc:SCO_ALL-CHORISMATE-PWY
  • 10.1093/nar/28.1.27
 Kanehisa M, Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 2000 Jan 01;28(1):27–30. PMID: 10592173; PMCID: PMC102409.