Pathways Knowlegdes

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Pathway DOIs Note
GDP-mannose biosynthesis

Accession ID: BioCyc:META_PWY-5659
  • 10.1093/emboj/20.14.3657
Garami A, Ilg T. Disruption of mannose activation in Leishmania mexicana: GDP-mannose pyrophosphorylase is required for virulence, but not for viability. EMBO J. 2001 Jul 16;20(14):3657–66. PMID: 11447107; PMCID: PMC125538.
D-mannose degradation

Accession ID: BioCyc:META_MANNCAT-PWY
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D-sorbitol degradation II

Accession ID: BioCyc:ECO_SORBDEG-PWY
  • 10.1128/jb.124.1.26-38.1975
Lengeler J. Mutations affecting transport of the hexitols D-mannitol, D-glucitol, and galactitol in Escherichia coli K-12: isolation and mapping. J Bacteriol. 1975 Oct;124(1):26–38. doi: 10.1128/jb.124.1.26-38.1975.
superpathway of GDP-mannose-derived O-antigen building blocks biosynthesis

Accession ID: BioCyc:META_PWY-7323
  • 10.1016/j.carres.2003.07.009
  • 10.1128/jb.180.4.998-1001.1998
Samuel G, Reeves P. Biosynthesis of O-antigens: genes and pathways involved in nucleotide sugar precursor synthesis and O-antigen assembly. Carbohydr Res. 2003 Nov 14;338(23):2503–19. doi: 10.1016/j.carres.2003.07.009. PMID: 14670712.; Andrianopoulos K, Wang L, Reeves PR. Identification of the Fucose Synthetase Gene in the Colanic Acid Gene Cluster of Escherichia coli K-12. J Bacteriol. 1998 Feb 15;180(4):998–1001. doi: 10.1128/jb.180.4.998-1001.1998.
superpathway of hexitol degradation (bacteria)

Accession ID: BioCyc:META_HEXITOLDEGSUPER-PWY
  • 10.1017/s0031182097001121
  • 10.1128/jb.159.3.986-990.1984
SCHMATZ DM. The mannitol cycle in Eimeria. Parasitology. 1997 Jun;114(7):81–9. doi: 10.1017/s0031182097001121.; Novotny MJ, Reizer J, Esch F, Saier MH. Purification and properties of D-mannitol-1-phosphate dehydrogenase and D-glucitol-6-phosphate dehydrogenase from Escherichia coli. J Bacteriol. 1984 Sep;159(3):986–90. doi: 10.1128/jb.159.3.986-990.1984.
D-mannose degradation

Accession ID: BioCyc:ECO_MANNCAT-PWY
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superpathway of hexitol degradation (bacteria)

Accession ID: BioCyc:ECO_HEXITOLDEGSUPER-PWY
-
GDP-mannose biosynthesis

Accession ID: BioCyc:ECO_PWY-5659
  • 10.1007/s10529-011-0547-2
  • 10.1128/jb.94.5.1492-1496.1967
Honghong J, Fuping L, Yu L, Xiaoguang L, Yihan L, Hongbin W, Jing L, Yueting C. Synthesis of GDP-mannose using coupling fermentation of recombinant Escherichia coli. Biotechnol Lett. 2011 Jun;33(6):1145–50. doi: 10.1007/s10529-011-0547-2. PMID: 21293904.; Markovitz A, Sydiskis RJ, Lieberman MM. Genetic and Biochemical Studies on Mannose-Negative Mutants That Are Deficient in Phosphomannose Isomerase in Escherichia coli K-12. J Bacteriol. 1967 Nov;94(5):1492–6. doi: 10.1128/jb.94.5.1492-1496.1967.
colanic acid building blocks biosynthesis

Accession ID: BioCyc:META_COLANSYN-PWY
  • 10.1104/pp.106.083634
  • 10.1128/jb.180.4.998-1001.1998
  • 10.1146/annurev.biochem.75.103004.142545
Dai N, Petreikov M, Portnoy V, Katzir N, Pharr DM, Schaffer AA. Cloning and expression analysis of a UDP-galactose/glucose pyrophosphorylase from melon fruit provides evidence for the major metabolic pathway of galactose metabolism in raffinose oligosaccharide metabolizing plants. Plant Physiol. 2006 Sep;142(1):294–304. PMID: 16829585; PMCID: PMC1557607.; Whitfield C. Biosynthesis and Assembly of Capsular Polysaccharides in Escherichia coli. Annu. Rev. Biochem. 2006 Jun 01;75(1):39–68. doi: 10.1146/annurev.biochem.75.103004.142545.; Andrianopoulos K, Wang L, Reeves PR. Identification of the Fucose Synthetase Gene in the Colanic Acid Gene Cluster of Escherichia coli K-12. J Bacteriol. 1998 Feb 15;180(4):998–1001. doi: 10.1128/jb.180.4.998-1001.1998.
colanic acid building blocks biosynthesis

Accession ID: BioCyc:ECO_COLANSYN-PWY
  • 10.1146/annurev.biochem.75.103004.142545
Whitfield C. Biosynthesis and Assembly of Capsular Polysaccharides in Escherichia coli. Annu. Rev. Biochem. 2006 Jun 01;75(1):39–68. doi: 10.1146/annurev.biochem.75.103004.142545.
D-sorbitol degradation II

Accession ID: BioCyc:META_SORBDEG-PWY
  • 10.1111/j.1399-302x.1992.tb00528.x
Svensäter G, Edwardsson S, Kalfas S. Purification and properties of sorbitol-6-phosphate dehydrogenase from oral streptococci. Oral Microbiol Immunol. 1992 Jun;7(3):148–54. doi: 10.1111/j.1399-302x.1992.tb00528.x. PMID: 1408350.