superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle

Hajirezaei MR, Biemelt S, Peisker M, Lytovchenko A, Fernie AR, Sonnewald U. The influence of cytosolic phosphorylating glyceraldehyde 3-phosphate dehydrogenase (GAPC) on potato tuber metabolism. J Exp Bot. 2006;57(10):2363–77. doi: 10.1093/jxb/erj207. PMID: 16798850.

Metabolites

ADP

Formula: C10H15N5O10P2 (427.02941500000003)

CAS ID: 58-64-0

CO2

Formula: CO2 (43.98983)

CAS ID: 124-38-9

Diphosphate

Formula: H4P2O7 (177.9432294)

CAS ID: 2466-09-3

H+

Formula: H (1.0078246)

CAS ID: 12408-02-5

H2O

Formula: H2O (18.0105642)

CAS ID: 7732-18-5

Magnesium cation

Formula: Mg (23.98505)

CAS ID: 22537-22-0

Potassium cation

Formula: K (38.963708)

CAS ID: 24203-36-9

QH(2)

Formula: C14H20O4 (252.136152)

CAS ID: 52590-98-4

oxaloacetate(2-)

Formula: C4H2O5 (129.9902242)

CAS ID: 149-63-3

2-oxoglutarate(2-)

Formula: C5H4O5 (144.00587339999998)

CAS ID: 64-15-3

succinate(2-)

Formula: C4H4O4 (116.01095839999999)

CAS ID: 56-14-4

butenedioate

Formula: C4H2O4 (113.99530920000001)

CAS ID: 17013-01-3

oxalate(2-)

Formula: C2O4 (87.97966)

CAS ID: 338-70-5

pyruvate

Formula: C3H3O3 (87.00821880000001)

CAS ID: 57-60-3

citrate(3-)

Formula: C6H5O7 (189.00352800000002)

CAS ID: 126-44-3

NADPH(4-)

Formula: C21H26N7O17P3 (741.0598016)

CAS ID: 53-57-6

ATP(4-)

Formula: C10H12N5O13P3 (502.9644492)

CAS ID:

NADH(2-)

Formula: C21H27N7O14P2 (663.1091182000001)

CAS ID:

NAD(1-)

Formula: C21H26N7O14P2 (662.1012936000001)

CAS ID: 53-84-9

NADP(3-)

Formula: C21H25N7O17P3 (740.051977)

CAS ID: 53-59-8

beta-D-fructofuranose 1,6-bisphosphate(4-)

Formula: C6H10O12P2 (335.96475200000003)

CAS ID: 488-69-7



Enzyme

EC Number name full name note
1.1.1.37 malate dehydrogenase (S)-malate:NAD+ oxidoreductase
1.2.1.9 glyceraldehyde-3-phosphate dehydrogenase (NADP+) D-glyceraldehyde-3-phosphate:NADP+ oxidoreductase
1.2.4.1 pyruvate dehydrogenase (acetyl-transferring) pyruvate:[dihydrolipoyllysine-residue acetyltransferase]-lipoyllysine 2-oxidoreductase (decarboxylating, acceptor-acetylating)
1.3.5.1 succinate dehydrogenase succinate:quinone oxidoreductase
2.3.1.12 dihydrolipoyllysine-residue acetyltransferase acetyl-CoA:enzyme N6-(dihydrolipoyl)lysine S-acetyltransferase
2.3.3.16 citrate synthase (unknown stereospecificity) acetyl-CoA:oxaloacetate C-acetyltransferase (thioester-hydrolysing)
2.7.1.11 6-phosphofructokinase ATP:D-fructose-6-phosphate 1-phosphotransferase
2.7.1.40 pyruvate kinase ATP:pyruvate 2-O-phosphotransferase
2.7.1.90 diphosphate-fructose-6-phosphate 1-phosphotransferase diphosphate:D-fructose-6-phosphate 1-phosphotransferase
2.7.2.3 phosphoglycerate kinase ATP:3-phospho-D-glycerate 1-phosphotransferase
4.1.2.13 fructose-bisphosphate aldolase D-fructose-1,6-bisphosphate D-glyceraldehyde-3-phosphate-lyase (glycerone-phosphate-forming)
4.2.1.11 phosphopyruvate hydratase 2-phospho-D-glycerate hydro-lyase (phosphoenolpyruvate-forming)
4.2.1.2 fumarate hydratase (S)-malate hydro-lyase (fumarate-forming)
5.3.1.1 triose-phosphate isomerase D-glyceraldehyde-3-phosphate aldose-ketose-isomerase
5.4.2.12 phosphoglycerate mutase (2,3-diphosphoglycerate-independent) D-phosphoglycerate 2,3-phosphomutase (2,3-diphosphoglycerate-independent)
6.2.1.5 succinate-CoA ligase (ADP-forming) succinate:CoA ligase (ADP-forming)


Proteins

Protein ID name full name