Pathways Knowlegdes

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Pathway DOIs Note
Taurine Metabolism

Accession ID: PathBank:SMP0000797		 -
Inner Membrane Transport

Accession ID: PathBank:SMP0000808		 -
Sulfur Metabolism

Accession ID: PathBank:SMP0000939		 -
Sulfur Metabolism (Butanesulfonate)

Accession ID: PathBank:SMP0000940		 -
Sulfur Metabolism (Propanesulfonate)

Accession ID: PathBank:SMP0000941		 -
Sulfur Metabolism (Ethanesulfonate)

Accession ID: PathBank:SMP0000942		 -
Sulfur Metabolism (Isethionate)

Accession ID: PathBank:SMP0000943		 -
Sulfur Metabolism (Methanesulfonate)

Accession ID: PathBank:SMP0000944		 -
Taurine Metabolism I

Accession ID: PathBank:SMP0001044		 -
Differentiation pathway

Accession ID: WikiPathways:WP3223
  • 10.1093/brain/awn014
 Saadoun S, Bell BA, Verkman AS, Papadopoulos MC. Greatly improved neurological outcome after spinal cord compression injury in AQP4-deficient mice. Brain. 2008 Apr;131(Pt 4):1087–98. doi: 10.1093/brain/awn014. PMID: 18267965.
Trans-sulfuration, one-carbon metabolism and related pathways

Accession ID: WikiPathways:WP2525
  • 10.1016/j.cmet.2016.08.009
 Ducker GS, Rabinowitz JD. One-Carbon Metabolism in Health and Disease. Cell Metabolism. 2017 Jan;25(1):27–42. doi: 10.1016/j.cmet.2016.08.009.
Biochemical pathways: part I

Accession ID: WikiPathways:WP3604
  • 10.1016/s0303-2647(98)00019-7
 Michal G. On representation of metabolic pathways. Biosystems. 1998 Jun;47(1-2):1–7. doi: 10.1016/s0303-2647(98)00019-7. PMID: 9715748.
Amino acid conjugation

Accession ID: WikiPathways:WP715
  • 10.1517/17425255.3.2.159
 Knights KM, Sykes MJ, Miners JO. Amino acid conjugation: contribution to the metabolism and toxicity of xenobiotic carboxylic acids. Expert Opinion on Drug Metabolism & Toxicology. 2007 Apr;3(2):159–68. doi: 10.1517/17425255.3.2.159.
One-carbon metabolism and related pathways

Accession ID: WikiPathways:WP1770		 -
Methionine metabolism leading to sulfur amino acids and related disorders

Accession ID: WikiPathways:WP4292
  • 10.1007/s10545-005-4497-5
 Linnebank M, Lagler F, Muntau AC, Röschinger W, Olgemöller B, Fowler B, Koch HG. Methionine adenosyltransferase (MAT) I/III deficiency with concurrent hyperhomocysteinaemia: two novel cases. J Inherit Metab Dis. 2005;28(6):1167–8. doi: 10.1007/s10545-005-4497-5. PMID: 16435220.
One-carbon donor

Accession ID: WikiPathways:WP3125		 -
Pluripotent stem cell differentiation pathway

Accession ID: WikiPathways:WP2848
  • 10.1038/nrn3053
 David S, Kroner A. Repertoire of microglial and macrophage responses after spinal cord injury. Nat Rev Neurosci. 2011 Jun 15;12(7):388–99. doi: 10.1038/nrn3053. PMID: 21673720.
Cysteine and methionine catabolism

Accession ID: WikiPathways:WP4504
  • 10.1038/nsb738
 Bandarian V, Pattridge KA, Lennon BW, Huddler DP, Matthews RG, Ludwig ML. Domain alternation switches B12-dependent methionine synthase to the activation conformation. Nature Structural & Molecular Biology. 2001 Dec 03;9(1):53–6. doi: 10.1038/nsb738.
Trans-sulfuration pathway

Accession ID: WikiPathways:WP3145
  • 10.1016/j.taap.2009.11.019
 Beger RD, Sun J, Schnackenberg LK. Metabolomics approaches for discovering biomarkers of drug-induced hepatotoxicity and nephrotoxicity. Toxicol Appl Pharmacol. 2010 Mar 01;243(2):154–66. doi: 10.1016/j.taap.2009.11.019. PMID: 19932708.
Trans-sulfuration pathway

Accession ID: WikiPathways:WP2333
  • 10.1016/j.taap.2009.11.019
 Beger RD, Sun J, Schnackenberg LK. Metabolomics approaches for discovering biomarkers of drug-induced hepatotoxicity and nephrotoxicity. Toxicol Appl Pharmacol. 2010 Mar 01;243(2):154–66. doi: 10.1016/j.taap.2009.11.019. PMID: 19932708.