Pathways Knowlegdes

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Pathway DOIs Note
trans-zeatin biosynthesis

Accession ID: BioCyc:META_PWY-2681
  • 10.1038/nature05504
  • 10.1074/jbc.m314195200
  • 10.1093/pcp/pce112
  • 10.1146/annurev.arplant.52.1.89
 Kurakawa T, Ueda N, Maekawa M, Kobayashi K, Kojima M, Nagato Y, Sakakibara H, Kyozuka J. Direct control of shoot meristem activity by a cytokinin-activating enzyme. Nature. 2007 Feb 08;445(7128):652–5. doi: 10.1038/nature05504. PMID: 17287810.; Kasahara H, Takei K, Ueda N, Hishiyama S, Yamaya T, Kamiya Y, Yamaguchi S, Sakakibara H. Distinct Isoprenoid Origins of cis- and trans-Zeatin Biosyntheses in Arabidopsis. Journal of Biological Chemistry. 2004 Apr;279(14):14049–54. doi: 10.1074/jbc.m314195200.; Kakimoto T. Identification of plant cytokinin biosynthetic enzymes as dimethylallyl diphosphate:ATP/ADP isopentenyltransferases. Plant Cell Physiol. 2001 Jul;42(7):677–85. doi: 10.1093/pcp/pce112. PMID: 11479373.; Mok DW, Mok MC. CYTOKININMETABOLISM ANDACTION. Annu. Rev. Plant. Physiol. Plant. Mol. Biol. 2001 Jun;52(1):89–118. doi: 10.1146/annurev.arplant.52.1.89.
cytokinins 9-N-glucoside biosynthesis

Accession ID: BioCyc:ARA_PWY-2901
  • 10.1074/jbc.m409569200
 Hou B, Lim E, Higgins GS, Bowles DJ. N-Glucosylation of Cytokinins by Glycosyltransferases of Arabidopsis thaliana. Journal of Biological Chemistry. 2004 Nov;279(46):47822–32. doi: 10.1074/jbc.m409569200.
cytokinins 7-N-glucoside biosynthesis

Accession ID: BioCyc:META_PWY-2881
  • 10.1074/jbc.m409569200
 Hou B, Lim E, Higgins GS, Bowles DJ. N-Glucosylation of Cytokinins by Glycosyltransferases of Arabidopsis thaliana. Journal of Biological Chemistry. 2004 Nov;279(46):47822–32. doi: 10.1074/jbc.m409569200.
cytokinins 9-N-glucoside biosynthesis

Accession ID: BioCyc:META_PWY-2901
  • 10.1074/jbc.m409569200
 Hou B, Lim E, Higgins GS, Bowles DJ. N-Glucosylation of Cytokinins by Glycosyltransferases of Arabidopsis thaliana. Journal of Biological Chemistry. 2004 Nov;279(46):47822–32. doi: 10.1074/jbc.m409569200.
cytokinin-O-glucosides biosynthesis

Accession ID: BioCyc:META_PWY-2902
  • 10.1073/pnas.96.1.284
  • 10.1074/jbc.m409569200
 Hou B, Lim E, Higgins GS, Bowles DJ. N-Glucosylation of Cytokinins by Glycosyltransferases of Arabidopsis thaliana. Journal of Biological Chemistry. 2004 Nov;279(46):47822–32. doi: 10.1074/jbc.m409569200.; Martin RC, Mok MC, Mok DWS. Isolation of a cytokinin gene, ZOG1 , encoding zeatin O -glucosyltransferase from Phaseolus lunatus. Proc. Natl. Acad. Sci. U.S.A. 1999 Jan 05;96(1):284–9. doi: 10.1073/pnas.96.1.284.
cytokinins 7-N-glucoside biosynthesis

Accession ID: BioCyc:ARA_PWY-2881
  • 10.1074/jbc.m409569200
 Hou B, Lim E, Higgins GS, Bowles DJ. N-Glucosylation of Cytokinins by Glycosyltransferases of Arabidopsis thaliana. Journal of Biological Chemistry. 2004 Nov;279(46):47822–32. doi: 10.1074/jbc.m409569200.; Bernard A, Matheron B, Matet P, Viard H. [Atypical lung resection under thoracoscopy]. Presse Med. 1992 Apr 11;21(14):676–7. PMID: 1534621.
cytokinins degradation

Accession ID: BioCyc:META_PWY-2841
  • 10.1007/s10265-003-0096-4
  • 10.1104/pp.125.1.378
 Schmülling T, Werner T, Riefler M, Krupková E, Bartrina y Manns I. Structure and function of cytokinin oxidase/dehydrogenase genes of maize, rice, Arabidopsis and other species. Journal of Plant Research. 2003 Apr 29;116(3):241–52. doi: 10.1007/s10265-003-0096-4.; Bilyeu KD, Cole JL, Laskey JG, Riekhof WR, Esparza TJ, Kramer MD, Morris RO. Molecular and biochemical characterization of a cytokinin oxidase from maize. Plant Physiol. 2001 Jan;125(1):378–86. PMID: 11154345; PMCID: PMC61018.
cytokinins degradation

Accession ID: BioCyc:ARA_PWY-2841
  • 10.1007/s10265-003-0096-4
  • 10.1104/pp.125.1.378
 Schmülling T, Werner T, Riefler M, Krupková E, Bartrina y Manns I. Structure and function of cytokinin oxidase/dehydrogenase genes of maize, rice, Arabidopsis and other species. Journal of Plant Research. 2003 Apr 29;116(3):241–52. doi: 10.1007/s10265-003-0096-4.; Bilyeu KD, Cole JL, Laskey JG, Riekhof WR, Esparza TJ, Kramer MD, Morris RO. Molecular and biochemical characterization of a cytokinin oxidase from maize. Plant Physiol. 2001 Jan;125(1):378–86. PMID: 11154345; PMCID: PMC61018.
trans-zeatin biosynthesis

Accession ID: BioCyc:ARA_PWY-2681
  • 10.1038/nature05504
  • 10.1074/jbc.m314195200
  • 10.1093/pcp/pce112
  • 10.1146/annurev.arplant.52.1.89
 Kurakawa T, Ueda N, Maekawa M, Kobayashi K, Kojima M, Nagato Y, Sakakibara H, Kyozuka J. Direct control of shoot meristem activity by a cytokinin-activating enzyme. Nature. 2007 Feb 08;445(7128):652–5. doi: 10.1038/nature05504. PMID: 17287810.; Kasahara H, Takei K, Ueda N, Hishiyama S, Yamaya T, Kamiya Y, Yamaguchi S, Sakakibara H. Distinct Isoprenoid Origins of cis- and trans-Zeatin Biosyntheses in Arabidopsis. Journal of Biological Chemistry. 2004 Apr;279(14):14049–54. doi: 10.1074/jbc.m314195200.; Kakimoto T. Identification of plant cytokinin biosynthetic enzymes as dimethylallyl diphosphate:ATP/ADP isopentenyltransferases. Plant Cell Physiol. 2001 Jul;42(7):677–85. doi: 10.1093/pcp/pce112. PMID: 11479373.; Mok DW, Mok MC. CYTOKININMETABOLISM ANDACTION. Annu. Rev. Plant. Physiol. Plant. Mol. Biol. 2001 Jun;52(1):89–118. doi: 10.1146/annurev.arplant.52.1.89.
Gravitropism under normal or artificial gravity environments

Accession ID: Plant Reactome:R-OSA-9826798		 -
Regulation of lemma joint development and leaf angle by cytokinin

Accession ID: Plant Reactome:R-OSA-9828944
  • 10.1007/s00299-016-2052-5
  • 10.1093/jxb/erw204
  • 10.1093/plphys/kiac401
  • 10.1104/pp.109.140806
  • 10.1105/tpc.114.132092
  • 10.1146/annurev-arplant-042817-040422
 Huang P, Zhao J, Hong J, Zhu B, Xia S, Zhu E, Han P, Zhang K. Cytokinins regulate rice lamina joint development and leaf angle. Plant Physiol. 2023 Jan 02;191(1):56–69. PMID: 36031806; PMCID: PMC9806582.; Wang B, Smith SM, Li J. Genetic Regulation of Shoot Architecture. Annu Rev Plant Biol. 2018 Apr 29;69():437–68. doi: 10.1146/annurev-arplant-042817-040422. PMID: 29553800.; Luo X, Zheng J, Huang R, Huang Y, Wang H, Jiang L, Fang X. Phytohormones signaling and crosstalk regulating leaf angle in rice. Plant Cell Rep. 2016 Dec;35(12):2423–33. doi: 10.1007/s00299-016-2052-5. PMID: 27623811.; Feng Z, Wu C, Wang C, Roh J, Zhang L, Chen J, Zhang S, Zhang H, Yang C, Hu J, You X, Liu X, Yang X, Guo X, Zhang X, Wu F, Terzaghi W, Kim SK, Jiang L, Wan J. SLG controls grain size and leaf angle by modulating brassinosteroid homeostasis in rice. J Exp Bot. 2016 Jul;67(14):4241–53. PMID: 27252468; PMCID: PMC5301929.; Tong H, Xiao Y, Liu D, Gao S, Liu L, Yin Y, Jin Y, Qian Q, Chu C. Brassinosteroid regulates cell elongation by modulating gibberellin metabolism in rice. Plant Cell. 2014 Nov;26(11):4376–93. PMID: 25371548; PMCID: PMC4277228.; Tanaka A, Nakagawa H, Tomita C, Shimatani Z, Ohtake M, Nomura T, Jiang CJ, Dubouzet JG, Kikuchi S, Sekimoto H, Yokota T, Asami T, Kamakura T, Mori M. BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice. Plant Physiol. 2009 Oct;151(2):669–80. PMID: 19648232; PMCID: PMC2754635.
Shoot gravitropism: development, growth, and architecture of shoot in response to gravity

Accession ID: Plant Reactome:R-OSA-9924422		 -
Metabolism and regulation

Accession ID: Plant Reactome:R-OAU-2744345		 -
Cytokinins conjugates biosynthesis

Accession ID: Plant Reactome:R-TAE-1119292		 -
Cytokinins 9-N-glucoside biosynthesis

Accession ID: Plant Reactome:R-FVE-1119375		 -
Metabolism and regulation

Accession ID: Plant Reactome:R-MES-2744345		 -
Hormone signaling, transport, and metabolism

Accession ID: Plant Reactome:R-MES-2744341		 -
Metabolism and regulation

Accession ID: Plant Reactome:R-TDI-2744345		 -
Metabolism and regulation

Accession ID: Plant Reactome:R-DRO-2744345		 -
Hormone signaling, transport, and metabolism

Accession ID: Plant Reactome:R-OGU-2744341		 -