Pathways Knowlegdes

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Pathway DOIs Note
L-selenocysteine biosynthesis I (bacteria)

Accession ID: BioCyc:META_PWY0-901
  • 10.1146/annurev.bi.65.070196.000503
 Stadtman TC. Selenocysteine. Annu Rev Biochem. 1996;65():83–100. doi: 10.1146/annurev.bi.65.070196.000503. PMID: 8811175.
L-selenocysteine biosynthesis I (bacteria)

Accession ID: BioCyc:ECO_PWY0-901		 -
superoxide radicals degradation

Accession ID: BioCyc:MTBH37RV_DETOX1-PWY		 -
superoxide radicals degradation

Accession ID: BioCyc:META_DETOX1-PWY
  • 10.1007/bf00018463
  • 10.1007/bf02172918
  • 10.1016/s0891-5849(97)00109-3
  • 10.1016/s0960-9822(00)00168-8
  • 10.1073/pnas.87.24.9903
  • 10.1093/jexbot/53.372.1331
  • 10.1104/pp.104.3.889
  • 10.1104/pp.105.065284
  • 10.1104/pp.112.1.327
  • 10.1104/pp.118.2.637
 Chu CC, Lee WC, Guo WY, Pan SM, Chen LJ, Li HM, Jinn TL. A copper chaperone for superoxide dismutase that confers three types of copper/zinc superoxide dismutase activity in Arabidopsis. Plant Physiol. 2005 Sep;139(1):425–36. PMID: 16126858; PMCID: PMC1203391.; Alscher RG, Erturk N, Heath LS. Role of superoxide dismutases (SODs) in controlling oxidative stress in plants. 2002 May 15;53(372):1331–41. doi: 10.1093/jxb/53.372.1331.; Kliebenstein DJ, Monde RA, Last RL. Superoxide dismutase in Arabidopsis: an eclectic enzyme family with disparate regulation and protein localization. Plant Physiol. 1998 Oct;118(2):637–50. PMID: 9765550; PMCID: PMC34840.; McClung CR. Regulation of catalases in Arabidopsis. Free Radic Biol Med. 1997;23(3):489–96. doi: 10.1016/s0891-5849(97)00109-3. PMID: 9214587.; Frugoli JA, Zhong HH, Nuccio ML, McCourt P, McPeek MA, Thomas TL, McClung CR. Catalase is encoded by a multigene family in Arabidopsis thaliana (L.) Heynh. Plant Physiol. 1996 Sep;112(1):327–36. PMID: 8819328; PMCID: PMC157953.; Zhong HH, McClung CR. The circadian clock gates expression of two Arabidopsis catalase genes to distinct and opposite circadian phases. Mol Gen Genet. 1996 May 23;251(2):196–203. doi: 10.1007/bf02172918. PMID: 8668130.; Jones JD. Plant pathology. Paranoid plants have their genes examined. Curr Biol. 1994 Aug 01;4(8):749–51. doi: 10.1016/s0960-9822(00)00168-8. PMID: 7953568.; Zhong HH, Young JC, Pease EA, Hangarter RP, McClung CR. Interactions between Light and the Circadian Clock in the Regulation of CAT2 Expression in Arabidopsis. Plant Physiol. 1994 Mar;104(3):889–98. PMID: 12232134; PMCID: PMC160686.; Hindges R, Slusarenko A. cDNA and derived amino acid sequence of a cytosolic Cu,Zn superoxide dismutase from Arabidopsis thaliana (L.) Heyhn. Plant Mol Biol. 1992 Jan;18(1):123–5. doi: 10.1007/bf00018463. PMID: 1731963.; Van Camp W, Bowler C, Villarroel R, Tsang EW, Van Montagu M, Inzé D. Characterization of iron superoxide dismutase cDNAs from plants obtained by genetic complementation in Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 1990 Dec;87(24):9903–7. doi: 10.1073/pnas.87.24.9903.
superoxide radicals degradation

Accession ID: BioCyc:ECO_DETOX1-PWY		 -
drosopterin and aurodrosopterin biosynthesis

Accession ID: BioCyc:META_PWY-7442
  • 10.1042/bj20060424
  • 10.1074/jbc.m109.016493
 Kim J, Park SI, Ahn C, Kim H, Yim J. Guanine Deaminase Functions as Dihydropterin Deaminase in the Biosynthesis of Aurodrosopterin, a Minor Red Eye Pigment of Drosophila. Journal of Biological Chemistry. 2009 Aug;284(35):23426–35. doi: 10.1074/jbc.m109.016493.; Kim J, Suh H, Kim S, Kim K, Ahn C, Yim J. Identification and characteristics of the structural gene for the Drosophila eye colour mutant sepia, encoding PDA synthase, a member of the omega class glutathione S-transferases. Biochem J. 2006 Sep 15;398(3):451–60. PMID: 16712527; PMCID: PMC1559464.
reactive oxygen species degradation

Accession ID: BioCyc:MTBH37RV_DETOX1-PWY-1		 -
Sulfur Metabolism

Accession ID: PathBank:SMP0000939		 -
Sulfur Metabolism (Butanesulfonate)

Accession ID: PathBank:SMP0000940		 -
Sulfur Metabolism (Propanesulfonate)

Accession ID: PathBank:SMP0000941		 -
Sulfur Metabolism (Ethanesulfonate)

Accession ID: PathBank:SMP0000942		 -
Sulfur Metabolism (Isethionate)

Accession ID: PathBank:SMP0000943		 -
Sulfur Metabolism (Methanesulfonate)

Accession ID: PathBank:SMP0000944		 -
Cystinosis, Ocular Nonnephropathic

Accession ID: PathBank:SMP0120654		 -
Sulfur Metabolism (Butanesulfonate)

Accession ID: PathBank:SMP0121316		 -
Sulfur Metabolism (Methanesulfonate)

Accession ID: PathBank:SMP0121320		 -
Cystinosis, Ocular Nonnephropathic

Accession ID: PathBank:SMP0000722		 -
Sulfur Metabolism

Accession ID: PathBank:SMP0002382		 -
Cysteine Metabolism

Accession ID: PathBank:SMP0087189		 -
Cysteine Metabolism

Accession ID: PathBank:SMP0087290		 -