Pathways Knowlegdes

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Pathway DOIs Note
9-lipoxygenase and 9-hydroperoxide lyase pathway

Accession ID: PlantCyc:BARLEY_PWY-5408
  • 10.1007/s11745-008-3230-1
  • 10.1105/tpc.106.046052
 Boeglin WE, Itoh A, Zheng Y, Coffa G, Howe GA, Brash AR. Investigation of Substrate Binding and Product Stereochemistry Issues in Two Linoleate 9-Lipoxygenases. Lipids. 2008 Sep 16;43(11):979–87. doi: 10.1007/s11745-008-3230-1.; Vellosillo T, Martínez M, López MA, Vicente J, Cascón T, Dolan L, Hamberg M, Castresana C. Oxylipins produced by the 9-lipoxygenase pathway in Arabidopsis regulate lateral root development and defense responses through a specific signaling cascade. Plant Cell. 2007 Mar;19(3):831–46. PMID: 17369372; PMCID: PMC1867370.
9-lipoxygenase and 9-hydroperoxide lyase pathway

Accession ID: PlantCyc:OPUNCTATA_PWY-5408		 -
9-lipoxygenase and 9-hydroperoxide lyase pathway

Accession ID: PlantCyc:ORUFIPOGON_PWY-5408		 -
9-lipoxygenase and 9-hydroperoxide lyase pathway

Accession ID: PlantCyc:PINEAPPLE_PWY-5408		 -
9-lipoxygenase and 9-hydroperoxide lyase pathway

Accession ID: PlantCyc:TOMATO_PWY-5408
  • 10.1007/s11745-008-3230-1
  • 10.1105/tpc.106.046052
 Boeglin WE, Itoh A, Zheng Y, Coffa G, Howe GA, Brash AR. Investigation of Substrate Binding and Product Stereochemistry Issues in Two Linoleate 9-Lipoxygenases. Lipids. 2008 Sep 16;43(11):979–87. doi: 10.1007/s11745-008-3230-1.; Vellosillo T, Martínez M, López MA, Vicente J, Cascón T, Dolan L, Hamberg M, Castresana C. Oxylipins produced by the 9-lipoxygenase pathway in Arabidopsis regulate lateral root development and defense responses through a specific signaling cascade. Plant Cell. 2007 Mar;19(3):831–46. PMID: 17369372; PMCID: PMC1867370.
9-lipoxygenase and 9-hydroperoxide lyase pathway

Accession ID: PlantCyc:WHEATA_PWY-5408		 -
superpathway of lipoxygenase

Accession ID: PlantCyc:BARLEY_PWY-5433
  • 10.1002/1439-7633(20010803)2:7/8<494::aid-cbic494>3.0.co;2-1
  • 10.1007/s11745-008-3230-1
  • 10.1073/pnas.92.19.8675
  • 10.1074/jbc.m008964200
  • 10.1105/tpc.106.046052
  • 10.1146/annurev.arplant.53.100301.135248
  • 10.1271/bbb.60120
  • 10.1271/bbb.69.1545
 Boeglin WE, Itoh A, Zheng Y, Coffa G, Howe GA, Brash AR. Investigation of Substrate Binding and Product Stereochemistry Issues in Two Linoleate 9-Lipoxygenases. Lipids. 2008 Sep 16;43(11):979–87. doi: 10.1007/s11745-008-3230-1.; Vellosillo T, Martínez M, López MA, Vicente J, Cascón T, Dolan L, Hamberg M, Castresana C. Oxylipins produced by the 9-lipoxygenase pathway in Arabidopsis regulate lateral root development and defense responses through a specific signaling cascade. Plant Cell. 2007 Mar;19(3):831–46. PMID: 17369372; PMCID: PMC1867370.; KONGRIT D, JISAKA M, KOBAYASI K, NISHIGAICHI Y, NISHIMURA K, NAGAYA T, YOKOTA K. Molecular Cloning, Functional Expression, and Tissue Distribution of a Potato Sprout Allene Oxide Synthase Involved in a 9-Lipoxygenase Pathway. Bioscience, Biotechnology, and Biochemistry. 2006 Sep 23;70(9):2160–8. doi: 10.1271/bbb.60120.; KURODA H, OSHIMA T, KANEDA H, TAKASHIO M. Identification and Functional Analyses of Two cDNAs That Encode Fatty Acid 9-/13-Hydroperoxide Lyase (CYP74C) in Rice. Bioscience, Biotechnology, and Biochemistry. 2005 Jan;69(8):1545–54. doi: 10.1271/bbb.69.1545.; Feussner I, Wasternack C. THE LIPOXYGENASE PATHWAY. Annu. Rev. Plant Biol. 2002 Jun;53(1):275–97. doi: 10.1146/annurev.arplant.53.100301.135248.; Noordermeer MA, Veldink GA, Vliegenthart JF. Fatty acid hydroperoxide lyase: a plant cytochrome p450 enzyme involved in wound healing and pest resistance. Chembiochem. 2001 Aug 03;2(7-8):494–504. doi: 10.1002/1439-7633(20010803)2:7/8<494::aid-cbic494>3.0.co;2-1. PMID: 11828481.; Itoh A, Howe GA. Molecular cloning of a divinyl ether synthase. Identification as a CYP74 cytochrome P-450. J Biol Chem. 2001 Feb 02;276(5):3620–7. doi: 10.1074/jbc.m008964200. PMID: 11060314.; Bell E, Creelman RA, Mullet JE. A chloroplast lipoxygenase is required for wound-induced jasmonic acid accumulation in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 1995 Sep 12;92(19):8675–9. doi: 10.1073/pnas.92.19.8675.
9-lipoxygenase and 9-hydroperoxide lyase pathway

Accession ID: PlantCyc:BREADWHEAT_PWY-5408		 -
9-lipoxygenase and 9-hydroperoxide lyase pathway

Accession ID: PlantCyc:CORN_PWY-5408		 -
9-lipoxygenase and 9-hydroperoxide lyase pathway

Accession ID: PlantCyc:OILSEEDRAPE_PWY-5408		 -
superpathway of lipoxygenase

Accession ID: PlantCyc:CUCUMBER_PWY-5433
  • 10.1002/1439-7633(20010803)2:7/8<494::aid-cbic494>3.0.co;2-1
  • 10.1007/s11745-008-3230-1
  • 10.1073/pnas.92.19.8675
  • 10.1074/jbc.m008964200
  • 10.1105/tpc.106.046052
  • 10.1146/annurev.arplant.53.100301.135248
  • 10.1271/bbb.60120
  • 10.1271/bbb.69.1545
 Boeglin WE, Itoh A, Zheng Y, Coffa G, Howe GA, Brash AR. Investigation of Substrate Binding and Product Stereochemistry Issues in Two Linoleate 9-Lipoxygenases. Lipids. 2008 Sep 16;43(11):979–87. doi: 10.1007/s11745-008-3230-1.; Vellosillo T, Martínez M, López MA, Vicente J, Cascón T, Dolan L, Hamberg M, Castresana C. Oxylipins produced by the 9-lipoxygenase pathway in Arabidopsis regulate lateral root development and defense responses through a specific signaling cascade. Plant Cell. 2007 Mar;19(3):831–46. PMID: 17369372; PMCID: PMC1867370.; KONGRIT D, JISAKA M, KOBAYASI K, NISHIGAICHI Y, NISHIMURA K, NAGAYA T, YOKOTA K. Molecular Cloning, Functional Expression, and Tissue Distribution of a Potato Sprout Allene Oxide Synthase Involved in a 9-Lipoxygenase Pathway. Bioscience, Biotechnology, and Biochemistry. 2006 Sep 23;70(9):2160–8. doi: 10.1271/bbb.60120.; KURODA H, OSHIMA T, KANEDA H, TAKASHIO M. Identification and Functional Analyses of Two cDNAs That Encode Fatty Acid 9-/13-Hydroperoxide Lyase (CYP74C) in Rice. Bioscience, Biotechnology, and Biochemistry. 2005 Jan;69(8):1545–54. doi: 10.1271/bbb.69.1545.; Feussner I, Wasternack C. THE LIPOXYGENASE PATHWAY. Annu. Rev. Plant Biol. 2002 Jun;53(1):275–97. doi: 10.1146/annurev.arplant.53.100301.135248.; Noordermeer MA, Veldink GA, Vliegenthart JF. Fatty acid hydroperoxide lyase: a plant cytochrome p450 enzyme involved in wound healing and pest resistance. Chembiochem. 2001 Aug 03;2(7-8):494–504. doi: 10.1002/1439-7633(20010803)2:7/8<494::aid-cbic494>3.0.co;2-1. PMID: 11828481.; Itoh A, Howe GA. Molecular cloning of a divinyl ether synthase. Identification as a CYP74 cytochrome P-450. J Biol Chem. 2001 Feb 02;276(5):3620–7. doi: 10.1074/jbc.m008964200. PMID: 11060314.; Bell E, Creelman RA, Mullet JE. A chloroplast lipoxygenase is required for wound-induced jasmonic acid accumulation in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 1995 Sep 12;92(19):8675–9. doi: 10.1073/pnas.92.19.8675.
9-lipoxygenase and 9-hydroperoxide lyase pathway

Accession ID: PlantCyc:NTABACUM_TN90_PWY-5408
  • 10.1007/s11745-008-3230-1
  • 10.1105/tpc.106.046052
 Boeglin WE, Itoh A, Zheng Y, Coffa G, Howe GA, Brash AR. Investigation of Substrate Binding and Product Stereochemistry Issues in Two Linoleate 9-Lipoxygenases. Lipids. 2008 Sep 16;43(11):979–87. doi: 10.1007/s11745-008-3230-1.; Vellosillo T, Martínez M, López MA, Vicente J, Cascón T, Dolan L, Hamberg M, Castresana C. Oxylipins produced by the 9-lipoxygenase pathway in Arabidopsis regulate lateral root development and defense responses through a specific signaling cascade. Plant Cell. 2007 Mar;19(3):831–46. PMID: 17369372; PMCID: PMC1867370.
superpathway of lipoxygenase

Accession ID: PlantCyc:NTABACUM_TN90_PWY-5433
  • 10.1002/1439-7633(20010803)2:7/8<494::aid-cbic494>3.0.co;2-1
  • 10.1007/s11745-008-3230-1
  • 10.1073/pnas.92.19.8675
  • 10.1074/jbc.m008964200
  • 10.1105/tpc.106.046052
  • 10.1146/annurev.arplant.53.100301.135248
  • 10.1271/bbb.60120
  • 10.1271/bbb.69.1545
 Boeglin WE, Itoh A, Zheng Y, Coffa G, Howe GA, Brash AR. Investigation of Substrate Binding and Product Stereochemistry Issues in Two Linoleate 9-Lipoxygenases. Lipids. 2008 Sep 16;43(11):979–87. doi: 10.1007/s11745-008-3230-1.; Vellosillo T, Martínez M, López MA, Vicente J, Cascón T, Dolan L, Hamberg M, Castresana C. Oxylipins produced by the 9-lipoxygenase pathway in Arabidopsis regulate lateral root development and defense responses through a specific signaling cascade. Plant Cell. 2007 Mar;19(3):831–46. PMID: 17369372; PMCID: PMC1867370.; KONGRIT D, JISAKA M, KOBAYASI K, NISHIGAICHI Y, NISHIMURA K, NAGAYA T, YOKOTA K. Molecular Cloning, Functional Expression, and Tissue Distribution of a Potato Sprout Allene Oxide Synthase Involved in a 9-Lipoxygenase Pathway. Bioscience, Biotechnology, and Biochemistry. 2006 Sep 23;70(9):2160–8. doi: 10.1271/bbb.60120.; KURODA H, OSHIMA T, KANEDA H, TAKASHIO M. Identification and Functional Analyses of Two cDNAs That Encode Fatty Acid 9-/13-Hydroperoxide Lyase (CYP74C) in Rice. Bioscience, Biotechnology, and Biochemistry. 2005 Jan;69(8):1545–54. doi: 10.1271/bbb.69.1545.; Feussner I, Wasternack C. THE LIPOXYGENASE PATHWAY. Annu. Rev. Plant Biol. 2002 Jun;53(1):275–97. doi: 10.1146/annurev.arplant.53.100301.135248.; Noordermeer MA, Veldink GA, Vliegenthart JF. Fatty acid hydroperoxide lyase: a plant cytochrome p450 enzyme involved in wound healing and pest resistance. Chembiochem. 2001 Aug 03;2(7-8):494–504. doi: 10.1002/1439-7633(20010803)2:7/8<494::aid-cbic494>3.0.co;2-1. PMID: 11828481.; Itoh A, Howe GA. Molecular cloning of a divinyl ether synthase. Identification as a CYP74 cytochrome P-450. J Biol Chem. 2001 Feb 02;276(5):3620–7. doi: 10.1074/jbc.m008964200. PMID: 11060314.; Bell E, Creelman RA, Mullet JE. A chloroplast lipoxygenase is required for wound-induced jasmonic acid accumulation in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 1995 Sep 12;92(19):8675–9. doi: 10.1073/pnas.92.19.8675.
9-lipoxygenase and 9-hydroperoxide lyase pathway

Accession ID: PlantCyc:POTATO_PWY-5408
  • 10.1007/s11745-008-3230-1
  • 10.1105/tpc.106.046052
 Boeglin WE, Itoh A, Zheng Y, Coffa G, Howe GA, Brash AR. Investigation of Substrate Binding and Product Stereochemistry Issues in Two Linoleate 9-Lipoxygenases. Lipids. 2008 Sep 16;43(11):979–87. doi: 10.1007/s11745-008-3230-1.; Vellosillo T, Martínez M, López MA, Vicente J, Cascón T, Dolan L, Hamberg M, Castresana C. Oxylipins produced by the 9-lipoxygenase pathway in Arabidopsis regulate lateral root development and defense responses through a specific signaling cascade. Plant Cell. 2007 Mar;19(3):831–46. PMID: 17369372; PMCID: PMC1867370.
alpha-Linolenic Acid Metabolism

Accession ID: PathBank:SMP0121229		 -