superpathway of fucose and rhamnose degradation

Lopez-Campistrous A, Semchuk P, Burke L, Palmer-Stone T, Brokx SJ, Broderick G, Bottorff D, Bolch S, Weiner JH, Ellison MJ. Localization, annotation, and comparison of the Escherichia coli K-12 proteome under two states of growth. Mol Cell Proteomics. 2005 Aug;4(8):1205–9. doi: 10.1074/mcp.d500006-mcp200. PMID: 15911532.

Metabolites

(S)-Lactaldehyde

Formula: C3H6O2 (74.0367776)

CAS ID: 3913-64-2

(S)-Propane-1,2-diol

Formula: C3H8O2 (76.0524268)

CAS ID: 4254-15-3

1,10-Phenanthroline

Formula: C12H8N2 (180.0687448)

CAS ID: 66-71-7

alpha-L-Fucopyranose

Formula: C6H12O5 (164.06847019999998)

CAS ID: 6696-41-9

alpha-L-Rhamnose

Formula: C6H12O5 (164.06847019999998)

CAS ID: 6014-42-2

beta-L-Fucopyranose

Formula: C6H12O5 (164.06847019999998)

CAS ID: 13224-93-6

Cadmium

Formula: Cd (113.903361)

CAS ID: 7440-43-9

Copper

Formula: Cu (62.929599)

CAS ID: 7440-50-8

Fe2+

Formula: Fe (55.934939)

CAS ID: 15438-31-0

H+

Formula: H (1.0078246)

CAS ID: 12408-02-5

H2O

Formula: H2O (18.0105642)

CAS ID: 7732-18-5

L-Fuculose

Formula: C6H12O5 (164.06847019999998)

CAS ID: 13074-08-3

Lithium

Formula: Li (7.016005)

CAS ID: 7439-93-2

Magnesium cation

Formula: Mg (23.98505)

CAS ID: 22537-22-0

Manganese(2+)

Formula: Mn (54.938046)

CAS ID: 7439-96-5

Mercury(2+)

Formula: Hg (201.970632)

CAS ID: 14302-87-5

Potassium cation

Formula: K (38.963708)

CAS ID: 24203-36-9

Zinc cation

Formula: Zn (63.929145)

CAS ID: 23713-49-7

Rhamnitol

Formula: C6H14O5 (166.08411940000002)

CAS ID: 488-28-8

2,2'-Bipyridine

Formula: C10H8N2 (156.0687448)

CAS ID: 366-18-7

pyruvate

Formula: C3H3O3 (87.00821880000001)

CAS ID: 57-60-3

ATP(4-)

Formula: C10H12N5O13P3 (502.9644492)

CAS ID:

NAD(1-)

Formula: C21H26N7O14P2 (662.1012936000001)

CAS ID: 53-84-9

ADP(3-)

Formula: C10H12N5O10P2 (424.0059412)

CAS ID:



Enzyme

EC Number name full name note
1.1.-.-
1.1.1.77 lactaldehyde reductase (R)[or (S)]-propane-1,2-diol:NAD+ oxidoreductase
1.2.1.21 glycolaldehyde dehydrogenase glycolaldehyde:NAD+ oxidoreductase
1.2.1.22 lactaldehyde dehydrogenase (S)-lactaldehyde:NAD+ oxidoreductase
2.7.1.5 rhamnulokinase ATP:L-rhamnulose 1-phosphotransferase
2.7.1.51 L-fuculokinase ATP:L-fuculose 1-phosphotransferase
4.1.2.17 L-fuculose-phosphate aldolase L-fuculose-1-phosphate (S)-lactaldehyde-lyase (glycerone-phosphate-forming)
4.1.2.19 rhamnulose-1-phosphate aldolase L-rhamnulose-1-phosphate (S)-lactaldehyde-lyase (glycerone-phosphate-forming)
5.1.3.29 L-fucose mutarotase L-fucose 1-epimerase
5.1.3.32 L-rhamnose mutarotase L-rhamnopyranose 1-epimerase
5.3.1.14 L-rhamnose isomerase L-rhamnose aldose-ketose-isomerase
5.3.1.25 L-fucose isomerase L-fucose aldose-ketose-isomerase
5.3.1.3 D-arabinose isomerase D-arabinose aldose-ketose-isomerase
5.4.99.62 D-ribose pyranase D-ribopyranose furanomutase


Proteins

Protein ID name full name
P0A9S1 fucO Lactaldehyde reductase
P0AB87 fucA L-fuculose phosphate aldolase
P0AEN8 fucU L-fucose mutarotase
P11553 fucK L-fuculokinase
P25553 aldA Lactaldehyde dehydrogenase
P32156 rhaM L-rhamnose mutarotase
P32169 rhaD Rhamnulose-1-phosphate aldolase
P32170 rhaA L-rhamnose isomerase
P32171 rhaB L-Rhamnulokinase
P33232 lldD L-lactate dehydrogenase
P69922 fucI L-fucose isomerase