superpathway of cholesterol degradation I (cholesterol oxidase)

Thomas ST, VanderVen BC, Sherman DR, Russell DG, Sampson NS. Pathway profiling in Mycobacterium tuberculosis: elucidation of cholesterol-derived catabolite and enzymes that catalyze its metabolism. J Biol Chem. 2011 Dec 23;286(51):43668–78. PMID: 22045806; PMCID: PMC3243565.; van der Geize R, Grommen AWF, Hessels GI, Jacobs AAC, Dijkhuizen L. The Steroid Catabolic Pathway of the Intracellular Pathogen Rhodococcus equi Is Important for Pathogenesis and a Target for Vaccine Development. PLoS Pathog. 2011 Aug 25;7(8):e1002181. doi: 10.1371/journal.ppat.1002181.; Kreit J, Sampson NS. Cholesterol oxidase: physiological functions. The FEBS Journal. 2009 Nov 16;276(23):6844–56. doi: 10.1111/j.1742-4658.2009.07378.x.; Petrusma M, Dijkhuizen L, van der Geize R. Rhodococcus rhodochrous DSM 43269 3-ketosteroid 9alpha-hydroxylase, a two-component iron-sulfur-containing monooxygenase with subtle steroid substrate specificity. Appl Environ Microbiol. 2009 Aug;75(16):5300–7. PMID: 19561185; PMCID: PMC2725467.; Horinouchi M, Hayashi T, Koshino H, Kurita T, Kudo T. Identification of 9,17-Dioxo-1,2,3,4,10,19-Hexanorandrostan-5-oic Acid, 4-Hydroxy-2-Oxohexanoic Acid, and 2-Hydroxyhexa-2,4-Dienoic Acid and Related Enzymes Involved in Testosterone Degradation in Comamonas testosteroni TA441. Appl Environ Microbiol. 2005 Sep;71(9):5275–81. doi: 10.1128/aem.71.9.5275-5281.2005.; Richmond W. Preparation and Properties of a Cholesterol Oxidase from Nocardia sp. and Its Application to the Enzymatic Assay of Total Cholesterol in Serum. 1973 Dec 01;19(12):1350–6. doi: 10.1093/clinchem/19.12.1350.; Stadtman TC, Cherkes A, Anfinsen CB. STUDIES ON THE MICROBIOLOGICAL DEGRADATION OF CHOLESTEROL. Journal of Biological Chemistry. 1954 Feb;206(2):511–23. doi: 10.1016/s0021-9258(19)50819-5.

Metabolites

1,10-Phenanthroline

Formula: C12H8N2 (180.0687448)

CAS ID: 66-71-7

Androstenedione

Formula: C19H26O2 (286.1932696)

CAS ID: 63-05-8

Cholest-4-en-3-one

Formula: C27H44O (384.3391974)

CAS ID: 601-57-0

Cholesterol

Formula: C27H46O (386.3548466)

CAS ID: 57-88-5

Diphosphate

Formula: H4P2O7 (177.9432294)

CAS ID: 2466-09-3

Fe2+

Formula: Fe (55.934939)

CAS ID: 15438-31-0

H+

Formula: H (1.0078246)

CAS ID: 12408-02-5

H2O

Formula: H2O (18.0105642)

CAS ID: 7732-18-5

Hydrogen peroxide

Formula: H2O2 (34.0054792)

CAS ID: 7722-84-1

Oxygen

Formula: O2 (31.98983)

CAS ID: 7782-44-7

Propanal

Formula: C3H6O (58.041862599999995)

CAS ID: 123-38-6

Zinc cation

Formula: Zn (63.929145)

CAS ID: 23713-49-7

pyruvate

Formula: C3H3O3 (87.00821880000001)

CAS ID: 57-60-3

NADPH(4-)

Formula: C21H26N7O17P3 (741.0598016)

CAS ID: 53-57-6

ATP(4-)

Formula: C10H12N5O13P3 (502.9644492)

CAS ID:

NAD(1-)

Formula: C21H26N7O14P2 (662.1012936000001)

CAS ID: 53-84-9

NADP(3-)

Formula: C21H25N7O17P3 (740.051977)

CAS ID: 53-59-8



Enzyme

EC Number name full name note
1.1.3.6 cholesterol oxidase cholesterol:oxygen oxidoreductase
1.13.11.25 3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione 4,5-dioxygenase 3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione:oxygen 4,5-oxidoreductase (decyclizing)
1.14.14.12 3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione monooxygenase 3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione,FMNH2:oxygen oxidoreductase
1.14.15.30 3-ketosteroid 9alpha-monooxygenase androsta-1,4-diene-3,17-dione,[reduced ferredoxin]:oxygen oxidoreductase (9alpha-hydroxylating)
1.2.1.10 acetaldehyde dehydrogenase (acetylating) acetaldehyde:NAD+ oxidoreductase (CoA-acetylating)
3.7.1.17 4,5:9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase 4,5:9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase ( (2Z,4Z)-2-hydroxyhexa-2,4-dienoate-forming)
4.1.3.39 4-hydroxy-2-oxovalerate aldolase 4-hydroxy-2-oxopentanoate pyruvate-lyase (acetaldehyde-forming)
5.3.3.1 steroid DELTA-isomerase 3-oxosteroid DELTA5-DELTA4-isomerase
6.2.1.41 3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate-CoA ligase 3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate:CoA ligase (AMP-forming)
6.2.1.42 3-oxocholest-4-en-26-oate-CoA ligase 3-oxocholest-4-en-26-oate:CoA ligase (AMP-forming)


Proteins

Protein ID name full name
B6V6V5 kshA 3-ketosteroid-9-alpha-monooxygenase, oxygenase component
E3UUE6 fadD19 3-oxocholest-4-en-26-oate--CoA ligase
P22637 choB Cholesterol oxidase
Q0S7V5 fadD3 3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl:CoA ligase
Q0S811 hsaA Flavin-dependent monooxygenase, oxygenase subunit HsaA
Q0S815 hsaF 4-hydroxy-2-oxovalerate aldolase 3
Q0S816 hsaG Acetaldehyde dehydrogenase 3
Q9KWQ5 hsaC Iron-dependent extradiol dioxygenase
Q9KWQ6 hsaD 4,5:9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase