9-cis-Retinal (BioCAD00000005607)

plant natural products microbial natural products

Metabolite Card

Formula: C20H28O (284.214)
SMILES: C/C(/C=C/C=C(/C)\C=C\C1=C(C)CCCC1(C)C)=C\C=O

Synonyms [en]

9-cis-Retinal; Isoretinene a; 9-cis-3,7-dimethyl-9-(2,6,6-trimethyl-1-cyclohexen-1-yl)-2,4,6,8-nonatetraenal; 9-cis-retinaldehyde; (2E,4E,6Z,8E)-3,7-Dimethyl-9-(2,6,6-trimethylcyclohex-1-en-1-yl)nona-2,4,6,8-tetraenal; 9-cis-vitamin A aldehyde

Reviewed

Last reviewed on 2024-06-28.

Cite this Page

9-cis-Retinal. 数据之源,洞见之始. SMRUCC genomics institute, a synthetic life researcher from China. https://biocad_registry.innovation.ac.cn/s/(-)-arctiin (retrieved 2026-01-03) (CAD Registry RN: BioCAD00000005607). Licensed under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).

Note

In vivo, 9-cis-retinal is formed through oxidation of 9-cis-retinol by cis-retinol dehydrogenase (cRDH). (PMID:15572038). The generation of retinoic acid from retinol is a two-step reaction, with the rate-limiting step being the oxidation of retinol into the intermediate retinaldehyde. Two classes of. unrelated enzymes have been implicated in the oxidation of retinol, the classical cytosolic medium chain alcohol dehydrogenases and recently identified microsomal members of the short chain alcohol dehydrogenase reductase (SDR) superfamily. Further oxidation of the retinaldehyde to the retinoic acid is believed to be catalyzed by several cytosolic aldehyde dehydrogenases. Retinoids are micronutrients required to maintain and promote health of vertebrates. They act physiologically by participating in the visual cycle, in regulating cell differentiation, in embryonic development (PMID:10893430), in maintaining normal reproduction, and in the immune response (PMID:8882153). In non-ocular tissues, the effects of retinoids within the body are mediated through retinoic acid receptors (RARs) and retinoid X receptors (RXRs), which act to regulate gene expression as ligand-dependent transcription factors. The naturally occurring ligands for these nuclear receptors are thought to be all-trans-retinoic acid for RARs and 9-cis-retinoic acid for RXRs (PMID:10322133). While many details of the molecular actions of the RARs and RXRs in regulating gene transcription are understood (PMID:10418975), tissue-specific synthetic pathway(s) of their ligands has not been adequately defined. Nevertheless, the therapeutic efficacy of retinoids, including 9-cis-retinoic acid, is well established in both tissue culture and animal models of breast cancer (PMID:8825126, PMID:12743994).

Entity Information

DBLinks

Other DBLinks
  • CAS Registry Number: 514-85-2
  • PubChem: 6436082
  • ChEBI: ChEBI:78273
  • HMDB: HMDB0006218
  • LipidMaps: LMPR01090017
  • KEGG: C16681
  • BioCyc: CPD-13536
  • NCBI MeSH: 9-cis-retinal
  • RefMet: RM0135418
  • Metlin: METLIN_41512
  • Coconut NaturalProduct: CNP0181557.0
  • Coconut NaturalProduct: CNP0273964.0

Class / Ontology

Metabolic Network
ID EC Number Name
KEGG:R08382 1.1.1.315 9-cis-retinol:NAD+ oxidoreductase
KEGG:R08383 1.1.1.- C16682 + C00006<=>C16681 + C00005 + C00080
KEGG:R08384 1.2.3.1 retinal:oxygen oxidoreductase
KEGG:R08385 1.2.1.36 retinal:NAD+ oxidoreductase
Rhea:RHEA:42053 9-cis-retinol + NAD+ => 9-cis-retinal + NADH + H+
Rhea:RHEA:42054 9-cis-retinal + NADH + H+ => 9-cis-retinol + NAD+
Rhea:RHEA:42055 9-cis-retinol + NAD+ <=> 9-cis-retinal + NADH + H+
Rhea:RHEA:42085 9-cis-retinal + NAD+ + H2O => 9-cis-retinoate + NADH + 2 H+
Rhea:RHEA:42086 9-cis-retinoate + NADH + 2 H+ => 9-cis-retinal + NAD+ + H2O
Rhea:RHEA:42087 9-cis-retinal + NAD+ + H2O <=> 9-cis-retinoate + NADH + 2 H+
Rhea:RHEA:54917 9-cis-retinol + NADP+ => 9-cis-retinal + NADPH + H+
Rhea:RHEA:54918 9-cis-retinal + NADPH + H+ => 9-cis-retinol + NADP+
Rhea:RHEA:54919 9-cis-retinol + NADP+ <=> 9-cis-retinal + NADPH + H+
Rhea:RHEA:65525 9-cis-retinal + reduced [NADPH—hemoprotein reductase] + O2 => 9-cis-retinoate + oxidized [NADPH—hemoprotein reductase] + H2O + 2 H+
Rhea:RHEA:65526 9-cis-retinoate + oxidized [NADPH—hemoprotein reductase] + H2O + 2 H+ => 9-cis-retinal + reduced [NADPH—hemoprotein reductase] + O2
Rhea:RHEA:65527 9-cis-retinal + reduced [NADPH—hemoprotein reductase] + O2 <=> 9-cis-retinoate + oxidized [NADPH—hemoprotein reductase] + H2O + 2 H+
BioCyc:RXN-12562 1.1.1.- CPD-13538 + NAD --> CPD-13536 + NADH + PROTON
BioCyc:RXN-21047 1.2.1.- CPD-13536 + NAD + WATER --> CPD-13549 + NADH + 2 PROTON
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Organism Source

Taxonomy Source

  1. Bagarius bagarius [ncbi taxid: 497982]
  2. Homo sapiens [ncbi taxid: 9606]
  3. Leuciscus leuciscus [ncbi taxid: 58325]
  4. Perca fluviatilis [ncbi taxid: 8168]
  5. Wallago attu [ncbi taxid: 36718]
  6. Blatta orientalis [ncbi taxid: 6976]
  7. Boswellia species [ncbi taxid: ]
  8. Citrullus lanatus [ncbi taxid: 3654]
  9. Galleria mellonella [ncbi taxid: 7137]
  10. Haloarcula japonica [ncbi taxid: 29282]
  11. Homo sapiens [ncbi taxid: 9606]
  12. Murraya paniculata [ncbi taxid: 43711]
  13. Mus musculus [ncbi taxid: 10090]
  14. Mycobacterium tuberculosis [ncbi taxid: 1773]
  15. Nostoc sp. PCC 7120 [ncbi taxid: ]
  16. Panax ginseng [ncbi taxid: 4054]
  17. Rana temporaria [ncbi taxid: 8407]
  18. Suberites domuncula [ncbi taxid: 55567]

Pathway Synthetic

pathway id name
Reactome:R-CEL-5362517 Signaling by Retinoic Acid
Reactome:R-CFA-162582 Signaling Pathways
Reactome:R-CFA-5362517 Signaling by Retinoic Acid
Reactome:R-DRE-5365859 RA biosynthesis pathway
Reactome:R-DDI-5365859 RA biosynthesis pathway
Reactome:R-GGA-5362517 Signaling by Retinoic Acid
Reactome:R-HSA-5362517 Signaling by Retinoic Acid
Reactome:R-MMU-162582 Signaling Pathways
Reactome:R-RNO-162582 Signaling Pathways
Reactome:R-RNO-9006931 Signaling by Nuclear Receptors
Reactome:R-SCE-9006931 Signaling by Nuclear Receptors
Reactome:R-SSC-5365859 RA biosynthesis pathway
Reactome:R-XTR-5362517 Signaling by Retinoic Acid
Reactome:R-BTA-162582 Signaling Pathways
Reactome:R-BTA-5365859 RA biosynthesis pathway
Reactome:R-CEL-9006931 Signaling by Nuclear Receptors
Reactome:R-CFA-9006931 Signaling by Nuclear Receptors
Reactome:R-DRE-162582 Signaling Pathways
Reactome:R-DRE-5362517 Signaling by Retinoic Acid
Reactome:R-DDI-5362517 Signaling by Retinoic Acid
View All Pathways