Hydrogen sulfide (BioCAD00000012221)
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Metabolite Card
Formula: H2S (33.9877)
SMILES: S
Synonyms [en]
hydrogen sulfide; Sulfide; Hydrogen-sulfide; Hydrosulfuric acid; sulfure d'hydrogene; Acide sulfhydrique
Last reviewed on 2024-06-28.
Cite this Page
Hydrogen sulfide. 数据之源,洞见之始. SMRUCC genomics institute, a synthetic life researcher from China.
https://biocad_registry.innovation.ac.cn/s/(-)-arctiin
(retrieved
2026-01-03) (CAD Registry RN: BioCAD00000012221). Licensed
under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).
Note
Hydrogen sulfide is a highly toxic and flammable gas. Because it is heavier than air it tends to accumulate at the bottom of poorly ventilated spaces. Although very pungent at first, it quickly deadens the sense of smell, so potential victims may be unaware of its presence until it is too late. H2S arises from virtually anywhere where elemental sulfur comes into contact with organic material, especially at high temperatures. Hydrogen sulfide is a covalent hydride chemically related to water (H2O) since oxygen and sulfur occur in the same periodic table group. It often results when bacteria break down organic matter in the absence of oxygen, such as in swamps, and sewers (alongside the process of anaerobic digestion). It also occurs in volcanic gases, natural gas and some well waters. It is also important to note that Hydrogen sulfide is a central participant in the sulfur cycle, the biogeochemical cycle of sulfur on Earth. As mentioned above, sulfur-reducing and sulfate-reducing bacteria derive energy from oxidizing hydrogen or organic molecules in the absence of oxygen by reducing sulfur or sulfate to hydrogen sulfide. Other bacteria liberate hydrogen sulfide from sulfur-containing amino acids. Several groups of bacteria can use hydrogen sulfide as fuel, oxidizing it to elemental sulfur or to sulfate by using oxygen or nitrate as oxidant. The purple sulfur bacteria and the green sulfur bacteria use hydrogen sulfide as electron donor in photosynthesis, thereby producing elemental sulfur. (In fact, this mode of photosynthesis is older than the mode of cyanobacteria, algae and plants which uses water as electron donor and liberates oxygen). Hydrogen sulfide can be found in Alcaligenes, Chromobacteriumn, Klebsiella, Proteus and Pseudomonas (PMID: 13061742).
DBLinks
- CAS Registry Number: 7783-06-4
- PubChem CID: 402
- ChEBI: 16136
- HMDB: HMDB0003276
- LipidMaps:
- KEGG: C00283
- BioCyc: HS
- NCBI MeSH: sulfur-32
- Wikipedia: Hydrogen_sulfide
Other DBLinks
- CAS Registry Number: 13765-09-8
- CAS Registry Number: 13940-21-1
- CAS Registry Number: 13981-57-2
- CAS Registry Number: 14257-58-0
- CAS Registry Number: 15117-53-0
- CAS Registry Number: 37331-50-3
- CAS Registry Number: 7704-34-9
- CAS Registry Number: 7783-06-4
- PubChem: 105168
- PubChem: 18779926
- PubChem: 402
- PubChem: 61783
- PubChem: 9942112
- ChEBI: ChEBI:16136
- ChEBI: ChEBI:37979
- ChEBI: ChEBI:37980
- ChEBI: ChEBI:37983
- HMDB: HMDB0003276
- KEGG: C00087
- KEGG: C00283
- BioCyc: HS
- NCBI MeSH: Hydrogen Sulfide
- NCBI MeSH: Slc7a2 protein, mouse
- NCBI MeSH: sulfur-32
- NCBI MeSH: Sulfur-33
- NCBI MeSH: Sulfur-35
- Wikipedia: Hydrogen sulfide
- Wikipedia: Hydrogen_sulfide
- Wikipedia: Sulfur-33
- Wikipedia: Sulfur-35
- MoNA: HMDB0003276_c_ms_894
- Coconut NaturalProduct: CNP0546425.0
Class / Ontology
- WishartLab ClassyFire: [Other non-metal sulfides] Other non-metal sulfides
- ChEBI: [CHEBI:16136] hydrogen sulfide
| ID | EC Number | Name |
|---|---|---|
| KEGG:R00782 | 4.4.1.1 | L-cysteine hydrogen-sulfide-lyase (deaminating; pyruvate-forming) |
| KEGG:R00858 | 1.8.1.2 | hydrogen-sulfide:NADP+ oxidoreductase |
| KEGG:R00859 | 1.8.7.1 | hydrogen-sulfide:ferredoxin oxidoreductase |
| KEGG:R00891 | 4.2.1.22 | L-serine hydro-lyase (adding hydrogen sulfide, L-cysteine-forming) |
| KEGG:R00897 | 2.5.1.47 | O3-acetyl-L-serine:hydrogen-sulfide 2-amino-2-carboxyethyltransferase; |
| KEGG:R00901 | 4.4.1.10 | L-cysteine hydrogen-sulfide-lyase (adding sulfite; L-cysteate-forming) |
| KEGG:R01283 | 4.4.1.2 | L-homocysteine hydrogen-sulfide-lyase (deaminating; 2-oxobutanoate-forming) |
| KEGG:R01287 | 2.5.1.49 | O-acetyl-L-homoserine:hydrogen sulfide S-(3-amino-3-carboxypropyl)transferase; |
| KEGG:R01288 | 2.5.1.48 | O4-succinyl-L-homoserine:hydrogen sulfide S-(3-amino-3-carboxypropyl)transferase; |
| KEGG:R01850 | 2.3.1.10 | acetyl-CoA:hydrogen-sulfide S-acetyltransferase |
| KEGG:R01851 | 1.8.3.4 | methanethiol:oxygen oxidoreductase |
| KEGG:R01874 | 4.4.1.15 | D-cysteine sulfide-lyase (deaminating; pyruvate-forming) |
| KEGG:R01875 | 2.8.1.3 | thiosulfate:thiol sulfurtransferase |
| KEGG:R02846 | 4.4.1.9 | cysteine hydrogen-sulfide-lyase (adding HCN) |
| KEGG:R03105 | 2.8.1.2 | 3-mercaptopyruvate:sulfide sulfurtransferase |
| KEGG:R03524 | 4.4.1.9 | L-cysteine hydrogen-sulfide-lyase (adding HCN) |
| KEGG:R03533 | donor:sulfur oxidoreductase | |
| KEGG:R05072 | 2.8.1.5 | thiosulfate:dithioerythritol sulfurtransferase |
| KEGG:R05486 | C06607 + C00001<=>C06608 + C00283 | |
| KEGG:R07274 | 2.5.1.47 | O-phospho-L-serine:hydrogen-sulfide 2-amino-2-carboxyethyltransferase |
Taxonomy Source
Pathway Synthetic
| pathway id | name |
|---|---|
| BioCyc:HUMAN_PWY-7927 | sulfide oxidation IV (metazoa) |
| BioCyc:META_PWY-5277 | thiosulfate disproportionation I (thiol-dependent) |
| BioCyc:META_PWY0-1329 | succinate to cytochrome bo oxidase electron transfer |
| BioCyc:META_PWY0-1561 | glycerol-3-phosphate to cytochrome bo oxidase electron transfer |
| BioCyc:META_PWY0-1335 | NADH to cytochrome bo oxidase electron transfer I |
| BioCyc:META_SULFMETII-PWY | assimilatory sulfate reduction II |
| BioCyc:META_SULFATE-CYS-PWY | superpathway of sulfate assimilation and cysteine biosynthesis |
| BioCyc:META_PWY-7898 | 4,4'-disulfanediyldibutanoate degradation |
| BioCyc:META_P222-PWY | sulfide oxidation I (sulfide-quinone reductase) |
| BioCyc:META_PARATHION-DEGRADATION-PWY | parathion degradation |
| BioCyc:META_HSERMETANA-PWY | L-methionine biosynthesis III |
| BioCyc:META_PWY-7977 | L-methionine biosynthesis IV (archaea) |
| BioCyc:META_PWY-5345 | superpathway of L-methionine biosynthesis (by sulfhydrylation) |
| BioCyc:META_PWY-8009 | L-cysteine biosynthesis VIII (Thermococcus kodakarensis) |
| BioCyc:META_PWY-1164 | carbon disulfide oxidation I (anaerobic) |
| BioCyc:META_PWY-5335 | superpathway of sulfide oxidation (Starkeya novella) |
| BioCyc:YEAST_PWY-5340 | sulfate activation for sulfonation |
| BioCyc:ARA_ASPSYNII-PWY | cyanide detoxification I |
| BioCyc:ARA_CYSTSYN-PWY | L-cysteine biosynthesis I |
| BioCyc:VCHO_SO4ASSIM-PWY | sulfate reduction I (assimilatory) |