Pathways Knowlegdes

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Pathway DOIs Note
Amino acid metabolism

Accession ID: Plant Reactome:R-PVU-2744343		 -
Amino acid catabolism

Accession ID: Plant Reactome:R-EGR-5655124		 -
Lysine degradation II

Accession ID: Plant Reactome:R-EGR-1119365
  • 10.1007/s007260170043
  • 10.1016/j.molp.2015.09.005
  • 10.1016/s1360-1385(00)01688-5
  • 10.1016/s1369-5266(00)00170-9
  • 10.1104/pp.103.035675
  • 10.1104/pp.124.3.1363
  • 10.1105/tpc.9.8.1305
  • 10.1146/annurev-arplant-043015-112213
  • 10.1186/1471-2229-10-113
 Galili G, Amir R, Fernie AR. The Regulation of Essential Amino Acid Synthesis and Accumulation in Plants. Annu Rev Plant Biol. 2016 Apr 29;67():153–78. doi: 10.1146/annurev-arplant-043015-112213. PMID: 26735064.; Hildebrandt TM, Nunes Nesi A, Araújo WL, Braun HP. Amino Acid Catabolism in Plants. Mol Plant. 2015 Nov 02;8(11):1563–79. doi: 10.1016/j.molp.2015.09.005. PMID: 26384576.; Anderson OD, Coleman-Derr D, Gu YQ, Heath S. Structural and transcriptional analysis of plant genes encoding the bifunctional lysine ketoglutarate reductase saccharopine dehydrogenase enzyme. BMC Plant Biology. 2010 Jun 16;10(1):113. doi: 10.1186/1471-2229-10-113.; Taylor NL, Heazlewood JL, Day DA, Millar AH. Lipoic acid-dependent oxidative catabolism of alpha-keto acids in mitochondria provides evidence for branched-chain amino acid catabolism in Arabidopsis. Plant Physiol. 2004 Feb;134(2):838–48. PMID: 14764908; PMCID: PMC344558.; Galili G, Tang G, Zhu X, Gakiere B. Lysine catabolism: a stress and development super-regulated metabolic pathway. Curr Opin Plant Biol. 2001 Jun;4(3):261–6. doi: 10.1016/s1369-5266(00)00170-9. PMID: 11312138.; Azevedo RA, Lea PJ. Lysine metabolism in higher plants. Amino Acids. 2001;20(3):261–79. doi: 10.1007/s007260170043. PMID: 11354603.; Zhu X, Tang G, Galili G. Characterization of the two saccharopine dehydrogenase isozymes of lysine catabolism encoded by the single composite AtLKR/SDH locus of Arabidopsis. Plant Physiol. 2000 Nov;124(3):1363–72. PMID: 11080311; PMCID: PMC59233.; Arruda P, Kemper EL, Papes F, Leite A. Regulation of lysine catabolism in higher plants. Trends Plant Sci. 2000 Aug;5(8):324–30. doi: 10.1016/s1360-1385(00)01688-5. PMID: 10908876.; Tang G, Miron D, Zhu-Shimoni JX, Galili G. Regulation of lysine catabolism through lysine-ketoglutarate reductase and saccharopine dehydrogenase in Arabidopsis. Plant Cell. 1997 Aug;9(8):1305–16. PMID: 9286108; PMCID: PMC156999.
Amino acid catabolism

Accession ID: Plant Reactome:R-PAB-5655124		 -
Metabolism and regulation

Accession ID: Plant Reactome:R-CSI-2744345		 -
Amino acid metabolism

Accession ID: Plant Reactome:R-CSI-2744343		 -
Amino acid catabolism

Accession ID: Plant Reactome:R-CSA-5655124		 -
Lysine degradation II

Accession ID: Plant Reactome:R-CSA-1119365
  • 10.1007/s007260170043
  • 10.1016/j.molp.2015.09.005
  • 10.1016/s1360-1385(00)01688-5
  • 10.1016/s1369-5266(00)00170-9
  • 10.1104/pp.103.035675
  • 10.1104/pp.124.3.1363
  • 10.1105/tpc.9.8.1305
  • 10.1146/annurev-arplant-043015-112213
  • 10.1186/1471-2229-10-113
 Galili G, Amir R, Fernie AR. The Regulation of Essential Amino Acid Synthesis and Accumulation in Plants. Annu Rev Plant Biol. 2016 Apr 29;67():153–78. doi: 10.1146/annurev-arplant-043015-112213. PMID: 26735064.; Hildebrandt TM, Nunes Nesi A, Araújo WL, Braun HP. Amino Acid Catabolism in Plants. Mol Plant. 2015 Nov 02;8(11):1563–79. doi: 10.1016/j.molp.2015.09.005. PMID: 26384576.; Anderson OD, Coleman-Derr D, Gu YQ, Heath S. Structural and transcriptional analysis of plant genes encoding the bifunctional lysine ketoglutarate reductase saccharopine dehydrogenase enzyme. BMC Plant Biology. 2010 Jun 16;10(1):113. doi: 10.1186/1471-2229-10-113.; Taylor NL, Heazlewood JL, Day DA, Millar AH. Lipoic acid-dependent oxidative catabolism of alpha-keto acids in mitochondria provides evidence for branched-chain amino acid catabolism in Arabidopsis. Plant Physiol. 2004 Feb;134(2):838–48. PMID: 14764908; PMCID: PMC344558.; Galili G, Tang G, Zhu X, Gakiere B. Lysine catabolism: a stress and development super-regulated metabolic pathway. Curr Opin Plant Biol. 2001 Jun;4(3):261–6. doi: 10.1016/s1369-5266(00)00170-9. PMID: 11312138.; Azevedo RA, Lea PJ. Lysine metabolism in higher plants. Amino Acids. 2001;20(3):261–79. doi: 10.1007/s007260170043. PMID: 11354603.; Zhu X, Tang G, Galili G. Characterization of the two saccharopine dehydrogenase isozymes of lysine catabolism encoded by the single composite AtLKR/SDH locus of Arabidopsis. Plant Physiol. 2000 Nov;124(3):1363–72. PMID: 11080311; PMCID: PMC59233.; Arruda P, Kemper EL, Papes F, Leite A. Regulation of lysine catabolism in higher plants. Trends Plant Sci. 2000 Aug;5(8):324–30. doi: 10.1016/s1360-1385(00)01688-5. PMID: 10908876.; Tang G, Miron D, Zhu-Shimoni JX, Galili G. Regulation of lysine catabolism through lysine-ketoglutarate reductase and saccharopine dehydrogenase in Arabidopsis. Plant Cell. 1997 Aug;9(8):1305–16. PMID: 9286108; PMCID: PMC156999.
Amino acid catabolism

Accession ID: Plant Reactome:R-PPE-5655124		 -
Lysine degradation II

Accession ID: Plant Reactome:R-PPE-1119365
  • 10.1007/s007260170043
  • 10.1016/j.molp.2015.09.005
  • 10.1016/s1360-1385(00)01688-5
  • 10.1016/s1369-5266(00)00170-9
  • 10.1104/pp.103.035675
  • 10.1104/pp.124.3.1363
  • 10.1105/tpc.9.8.1305
  • 10.1146/annurev-arplant-043015-112213
  • 10.1186/1471-2229-10-113
 Galili G, Amir R, Fernie AR. The Regulation of Essential Amino Acid Synthesis and Accumulation in Plants. Annu Rev Plant Biol. 2016 Apr 29;67():153–78. doi: 10.1146/annurev-arplant-043015-112213. PMID: 26735064.; Hildebrandt TM, Nunes Nesi A, Araújo WL, Braun HP. Amino Acid Catabolism in Plants. Mol Plant. 2015 Nov 02;8(11):1563–79. doi: 10.1016/j.molp.2015.09.005. PMID: 26384576.; Anderson OD, Coleman-Derr D, Gu YQ, Heath S. Structural and transcriptional analysis of plant genes encoding the bifunctional lysine ketoglutarate reductase saccharopine dehydrogenase enzyme. BMC Plant Biology. 2010 Jun 16;10(1):113. doi: 10.1186/1471-2229-10-113.; Taylor NL, Heazlewood JL, Day DA, Millar AH. Lipoic acid-dependent oxidative catabolism of alpha-keto acids in mitochondria provides evidence for branched-chain amino acid catabolism in Arabidopsis. Plant Physiol. 2004 Feb;134(2):838–48. PMID: 14764908; PMCID: PMC344558.; Galili G, Tang G, Zhu X, Gakiere B. Lysine catabolism: a stress and development super-regulated metabolic pathway. Curr Opin Plant Biol. 2001 Jun;4(3):261–6. doi: 10.1016/s1369-5266(00)00170-9. PMID: 11312138.; Azevedo RA, Lea PJ. Lysine metabolism in higher plants. Amino Acids. 2001;20(3):261–79. doi: 10.1007/s007260170043. PMID: 11354603.; Zhu X, Tang G, Galili G. Characterization of the two saccharopine dehydrogenase isozymes of lysine catabolism encoded by the single composite AtLKR/SDH locus of Arabidopsis. Plant Physiol. 2000 Nov;124(3):1363–72. PMID: 11080311; PMCID: PMC59233.; Arruda P, Kemper EL, Papes F, Leite A. Regulation of lysine catabolism in higher plants. Trends Plant Sci. 2000 Aug;5(8):324–30. doi: 10.1016/s1360-1385(00)01688-5. PMID: 10908876.; Tang G, Miron D, Zhu-Shimoni JX, Galili G. Regulation of lysine catabolism through lysine-ketoglutarate reductase and saccharopine dehydrogenase in Arabidopsis. Plant Cell. 1997 Aug;9(8):1305–16. PMID: 9286108; PMCID: PMC156999.
Amino acid metabolism

Accession ID: Plant Reactome:R-PTA-2744343		 -
Metabolism and regulation

Accession ID: Plant Reactome:R-MDO-2744345		 -
Amino acid metabolism

Accession ID: Plant Reactome:R-MDO-2744343		 -
Lysine degradation II

Accession ID: Plant Reactome:R-MDO-1119365
  • 10.1007/s007260170043
  • 10.1016/j.molp.2015.09.005
  • 10.1016/s1360-1385(00)01688-5
  • 10.1016/s1369-5266(00)00170-9
  • 10.1104/pp.103.035675
  • 10.1104/pp.124.3.1363
  • 10.1105/tpc.9.8.1305
  • 10.1146/annurev-arplant-043015-112213
  • 10.1186/1471-2229-10-113
 Galili G, Amir R, Fernie AR. The Regulation of Essential Amino Acid Synthesis and Accumulation in Plants. Annu Rev Plant Biol. 2016 Apr 29;67():153–78. doi: 10.1146/annurev-arplant-043015-112213. PMID: 26735064.; Hildebrandt TM, Nunes Nesi A, Araújo WL, Braun HP. Amino Acid Catabolism in Plants. Mol Plant. 2015 Nov 02;8(11):1563–79. doi: 10.1016/j.molp.2015.09.005. PMID: 26384576.; Anderson OD, Coleman-Derr D, Gu YQ, Heath S. Structural and transcriptional analysis of plant genes encoding the bifunctional lysine ketoglutarate reductase saccharopine dehydrogenase enzyme. BMC Plant Biology. 2010 Jun 16;10(1):113. doi: 10.1186/1471-2229-10-113.; Taylor NL, Heazlewood JL, Day DA, Millar AH. Lipoic acid-dependent oxidative catabolism of alpha-keto acids in mitochondria provides evidence for branched-chain amino acid catabolism in Arabidopsis. Plant Physiol. 2004 Feb;134(2):838–48. PMID: 14764908; PMCID: PMC344558.; Galili G, Tang G, Zhu X, Gakiere B. Lysine catabolism: a stress and development super-regulated metabolic pathway. Curr Opin Plant Biol. 2001 Jun;4(3):261–6. doi: 10.1016/s1369-5266(00)00170-9. PMID: 11312138.; Azevedo RA, Lea PJ. Lysine metabolism in higher plants. Amino Acids. 2001;20(3):261–79. doi: 10.1007/s007260170043. PMID: 11354603.; Zhu X, Tang G, Galili G. Characterization of the two saccharopine dehydrogenase isozymes of lysine catabolism encoded by the single composite AtLKR/SDH locus of Arabidopsis. Plant Physiol. 2000 Nov;124(3):1363–72. PMID: 11080311; PMCID: PMC59233.; Arruda P, Kemper EL, Papes F, Leite A. Regulation of lysine catabolism in higher plants. Trends Plant Sci. 2000 Aug;5(8):324–30. doi: 10.1016/s1360-1385(00)01688-5. PMID: 10908876.; Tang G, Miron D, Zhu-Shimoni JX, Galili G. Regulation of lysine catabolism through lysine-ketoglutarate reductase and saccharopine dehydrogenase in Arabidopsis. Plant Cell. 1997 Aug;9(8):1305–16. PMID: 9286108; PMCID: PMC156999.
Metabolism and regulation

Accession ID: Plant Reactome:R-OLO-2744345		 -
Amino acid metabolism

Accession ID: Plant Reactome:R-OLO-2744343		 -
Amino acid catabolism

Accession ID: Plant Reactome:R-OLO-5655124		 -
Lysine degradation II

Accession ID: Plant Reactome:R-OLO-1119365
  • 10.1007/s007260170043
  • 10.1016/j.molp.2015.09.005
  • 10.1016/s1360-1385(00)01688-5
  • 10.1016/s1369-5266(00)00170-9
  • 10.1104/pp.103.035675
  • 10.1104/pp.124.3.1363
  • 10.1105/tpc.9.8.1305
  • 10.1146/annurev-arplant-043015-112213
  • 10.1186/1471-2229-10-113
 Galili G, Amir R, Fernie AR. The Regulation of Essential Amino Acid Synthesis and Accumulation in Plants. Annu Rev Plant Biol. 2016 Apr 29;67():153–78. doi: 10.1146/annurev-arplant-043015-112213. PMID: 26735064.; Hildebrandt TM, Nunes Nesi A, Araújo WL, Braun HP. Amino Acid Catabolism in Plants. Mol Plant. 2015 Nov 02;8(11):1563–79. doi: 10.1016/j.molp.2015.09.005. PMID: 26384576.; Anderson OD, Coleman-Derr D, Gu YQ, Heath S. Structural and transcriptional analysis of plant genes encoding the bifunctional lysine ketoglutarate reductase saccharopine dehydrogenase enzyme. BMC Plant Biology. 2010 Jun 16;10(1):113. doi: 10.1186/1471-2229-10-113.; Taylor NL, Heazlewood JL, Day DA, Millar AH. Lipoic acid-dependent oxidative catabolism of alpha-keto acids in mitochondria provides evidence for branched-chain amino acid catabolism in Arabidopsis. Plant Physiol. 2004 Feb;134(2):838–48. PMID: 14764908; PMCID: PMC344558.; Galili G, Tang G, Zhu X, Gakiere B. Lysine catabolism: a stress and development super-regulated metabolic pathway. Curr Opin Plant Biol. 2001 Jun;4(3):261–6. doi: 10.1016/s1369-5266(00)00170-9. PMID: 11312138.; Azevedo RA, Lea PJ. Lysine metabolism in higher plants. Amino Acids. 2001;20(3):261–79. doi: 10.1007/s007260170043. PMID: 11354603.; Zhu X, Tang G, Galili G. Characterization of the two saccharopine dehydrogenase isozymes of lysine catabolism encoded by the single composite AtLKR/SDH locus of Arabidopsis. Plant Physiol. 2000 Nov;124(3):1363–72. PMID: 11080311; PMCID: PMC59233.; Arruda P, Kemper EL, Papes F, Leite A. Regulation of lysine catabolism in higher plants. Trends Plant Sci. 2000 Aug;5(8):324–30. doi: 10.1016/s1360-1385(00)01688-5. PMID: 10908876.; Tang G, Miron D, Zhu-Shimoni JX, Galili G. Regulation of lysine catabolism through lysine-ketoglutarate reductase and saccharopine dehydrogenase in Arabidopsis. Plant Cell. 1997 Aug;9(8):1305–16. PMID: 9286108; PMCID: PMC156999.
Metabolism and regulation

Accession ID: Plant Reactome:R-ZMA-2744345		 -
Amino acid metabolism

Accession ID: Plant Reactome:R-ZMA-2744343		 -