Pathways Knowlegdes
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| Pathway | DOIs | Note |
|---|---|---|
| Metabolism and regulation Accession ID: Plant Reactome:R-OAU-2744345 |
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| Carbohydrate metabolism Accession ID: Plant Reactome:R-OAU-2883407 |
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| Xylogalacturonan biosynthesis Accession ID: Plant Reactome:R-OAU-5655010 |
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| UDPXyl biosynthesis Accession ID: Plant Reactome:R-CME-1119563 |
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| Carbohydrate metabolism Accession ID: Plant Reactome:R-TAE-2883407 |
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| Xyloglucan biosynthesis Accession ID: Plant Reactome:R-TAE-5655101 |
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Sampedro J, Guttman M, Li LC, Cosgrove DJ. Evolutionary divergence of ß-expansin structure and function in grasses parallels emergence of distinctive primary cell wall traits. Plant J. 2015 Jan;81(1):108–20. doi: 10.1111/tpj.12715. PMID: 25353668.; Wang C, Li S, Ng S, Zhang B, Zhou Y, Whelan J, Wu P, Shou H. Mutation in xyloglucan 6-xylosytransferase results in abnormal root hair development in Oryza sativa. J Exp Bot. 2014 Aug;65(15):4149–57. PMID: 24834920; PMCID: PMC4112626.; Pauly M, Gille S, Liu L, Mansoori N, de Souza A, Schultink A, Xiong G. Hemicellulose biosynthesis. Planta. 2013 Oct;238(4):627–42. doi: 10.1007/s00425-013-1921-1. PMID: 23801299.; Vogel J. Unique aspects of the grass cell wall. Curr Opin Plant Biol. 2008 Jun;11(3):301–7. doi: 10.1016/j.pbi.2008.03.002. PMID: 18434239. |
| UDPXyl biosynthesis Accession ID: Plant Reactome:R-FVE-1119563 |
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| Metabolism and regulation Accession ID: Plant Reactome:R-MES-2744345 |
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| UDP-L-arabinose biosynthesis I (from UDP-xylose) Accession ID: Plant Reactome:R-MES-1119574 |
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Burget EG, Reiter WD. The mur4 mutant of arabidopsis is partially defective in the de novo synthesis of uridine diphospho L-arabinose. Plant Physiol. 1999 Oct;121(2):383–9. PMID: 10517829; PMCID: PMC59400. |
| Xylan biosynthesis Accession ID: Plant Reactome:R-MES-5654909 |
|
Burton RA, Fincher GB. Evolution and development of cell walls in cereal grains. Front Plant Sci. 2014;5():456. PMID: 25309555; PMCID: PMC4161051.; Rennie EA, Scheller HV. Xylan biosynthesis. Curr Opin Biotechnol. 2014 Apr;26():100–7. doi: 10.1016/j.copbio.2013.11.013. PMID: 24679265.; Lee C, Teng Q, Zhong R, Yuan Y, Ye Z. Functional roles of rice glycosyltransferase family GT43 in xylan biosynthesis. Plant Signaling & Behavior. 2014 Feb 13;9(3):e27809. doi: 10.4161/psb.27809.; Chiniquy D, Varanasi P, Oh T, Harholt J, Katnelson J, Singh S, Auer M, Simmons B, Adams PD, Scheller HV, Ronald PC. Three Novel Rice Genes Closely Related to the Arabidopsis IRX9, IRX9L, and IRX14 Genes and Their Roles in Xylan Biosynthesis. Front Plant Sci. 2013;4():83. PMID: 23596448; PMCID: PMC3622038.; Chiniquy D, Sharma V, Schultink A, Baidoo EE, Rautengarten C, Cheng K, Carroll A, Ulvskov P, Harholt J, Keasling JD, Pauly M, Scheller HV, Ronald PC. XAX1 from glycosyltransferase family 61 mediates xylosyltransfer to rice xylan. Proc Natl Acad Sci U S A. 2012 Oct 16;109(42):17117–22. PMID: 23027943; PMCID: PMC3479505.; Anders N, Wilkinson MD, Lovegrove A, Freeman J, Tryfona T, Pellny TK, Weimar T, Mortimer JC, Stott K, Baker JM, Defoin-Platel M, Shewry PR, Dupree P, Mitchell RAC. Glycosyl transferases in family 61 mediate arabinofuranosyl transfer onto xylan in grasses. Proc. Natl. Acad. Sci. U.S.A. 2012 Jan 03;109(3):989–93. doi: 10.1073/pnas.1115858109. |
| Metabolism and regulation Accession ID: Plant Reactome:R-TDI-2744345 |
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| UDPXyl biosynthesis Accession ID: Plant Reactome:R-TDI-1119563 |
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| Metabolism and regulation Accession ID: Plant Reactome:R-DRO-2744345 |
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| UDPXyl biosynthesis Accession ID: Plant Reactome:R-OGU-1119563 |
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| Carbohydrate metabolism Accession ID: Plant Reactome:R-OMI-2883407 |
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| Xylogalacturonan biosynthesis Accession ID: Plant Reactome:R-OMI-5655010 |
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| Carbohydrate metabolism Accession ID: Plant Reactome:R-GSU-2883407 |
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| Metabolism and regulation Accession ID: Plant Reactome:R-PTI-2744345 |
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| UDP-L-arabinose biosynthesis I (from UDP-xylose) Accession ID: Plant Reactome:R-PTI-1119574 |
|
Burget EG, Reiter WD. The mur4 mutant of arabidopsis is partially defective in the de novo synthesis of uridine diphospho L-arabinose. Plant Physiol. 1999 Oct;121(2):383–9. PMID: 10517829; PMCID: PMC59400. |
| Xylan biosynthesis Accession ID: Plant Reactome:R-PTI-5654909 |
|
Burton RA, Fincher GB. Evolution and development of cell walls in cereal grains. Front Plant Sci. 2014;5():456. PMID: 25309555; PMCID: PMC4161051.; Rennie EA, Scheller HV. Xylan biosynthesis. Curr Opin Biotechnol. 2014 Apr;26():100–7. doi: 10.1016/j.copbio.2013.11.013. PMID: 24679265.; Lee C, Teng Q, Zhong R, Yuan Y, Ye Z. Functional roles of rice glycosyltransferase family GT43 in xylan biosynthesis. Plant Signaling & Behavior. 2014 Feb 13;9(3):e27809. doi: 10.4161/psb.27809.; Chiniquy D, Varanasi P, Oh T, Harholt J, Katnelson J, Singh S, Auer M, Simmons B, Adams PD, Scheller HV, Ronald PC. Three Novel Rice Genes Closely Related to the Arabidopsis IRX9, IRX9L, and IRX14 Genes and Their Roles in Xylan Biosynthesis. Front Plant Sci. 2013;4():83. PMID: 23596448; PMCID: PMC3622038.; Chiniquy D, Sharma V, Schultink A, Baidoo EE, Rautengarten C, Cheng K, Carroll A, Ulvskov P, Harholt J, Keasling JD, Pauly M, Scheller HV, Ronald PC. XAX1 from glycosyltransferase family 61 mediates xylosyltransfer to rice xylan. Proc Natl Acad Sci U S A. 2012 Oct 16;109(42):17117–22. PMID: 23027943; PMCID: PMC3479505.; Anders N, Wilkinson MD, Lovegrove A, Freeman J, Tryfona T, Pellny TK, Weimar T, Mortimer JC, Stott K, Baker JM, Defoin-Platel M, Shewry PR, Dupree P, Mitchell RAC. Glycosyl transferases in family 61 mediate arabinofuranosyl transfer onto xylan in grasses. Proc. Natl. Acad. Sci. U.S.A. 2012 Jan 03;109(3):989–93. doi: 10.1073/pnas.1115858109. |