Pathways Knowlegdes
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| Pathway | DOIs | Note |
|---|---|---|
| superpathway of C28 brassinosteroid biosynthesis Accession ID: BioCyc:META_PWY-6544 |
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KATSUMATA T, HASEGAWA A, FUJIWARA T, KOMATSU T, NOTOMI M, ABE H, NATSUME M, KAWAIDE H. Arabidopsis CYP85A2 Catalyzes Lactonization Reactions in the Biosynthesis of 2-Deoxy-7-oxalactone Brassinosteroids. Bioscience, Biotechnology, and Biochemistry. 2008 Aug 23;72(8):2110–7. doi: 10.1271/bbb.80192.; Ohnishi T, Szatmari AM, Watanabe B, Fujita S, Bancos S, Koncz C, Lafos M, Shibata K, Yokota T, Sakata K, Szekeres M, Mizutani M. C-23 hydroxylation by Arabidopsis CYP90C1 and CYP90D1 reveals a novel shortcut in brassinosteroid biosynthesis. Plant Cell. 2006 Nov;18(11):3275–88. PMID: 17138693; PMCID: PMC1693957.; Shimada Y, Goda H, Nakamura A, Takatsuto S, Fujioka S, Yoshida S. Organ-specific expression of brassinosteroid-biosynthetic genes and distribution of endogenous brassinosteroids in Arabidopsis. Plant Physiol. 2003 Jan;131(1):287–97. PMID: 12529536; PMCID: PMC166808.; Shimada Y, Fujioka S, Miyauchi N, Kushiro M, Takatsuto S, Nomura T, Yokota T, Kamiya Y, Bishop GJ, Yoshida S. Brassinosteroid-6-oxidases from Arabidopsis and tomato catalyze multiple C-6 oxidations in brassinosteroid biosynthesis. Plant Physiol. 2001 Jun;126(2):770–9. PMID: 11402205; PMCID: PMC111167.; Ephritikhine G, Pagant S, Fujioka S, Takatsuto S, Lapous D, Caboche M, Kendrick RE, Barbier-Brygoo H. The sax1 mutation defines a new locus involved in the brassinosteroid biosynthesis pathway in Arabidopsis thaliana. Plant J. 1999 May;18(3):315–20. doi: 10.1046/j.1365-313x.1999.00455.x. PMID: 10377996. |
| superpathway of C28 brassinosteroid biosynthesis Accession ID: BioCyc:ARA_PWY-6544 |
|
KATSUMATA T, HASEGAWA A, FUJIWARA T, KOMATSU T, NOTOMI M, ABE H, NATSUME M, KAWAIDE H. Arabidopsis CYP85A2 Catalyzes Lactonization Reactions in the Biosynthesis of 2-Deoxy-7-oxalactone Brassinosteroids. Bioscience, Biotechnology, and Biochemistry. 2008 Aug 23;72(8):2110–7. doi: 10.1271/bbb.80192.; Ohnishi T, Szatmari AM, Watanabe B, Fujita S, Bancos S, Koncz C, Lafos M, Shibata K, Yokota T, Sakata K, Szekeres M, Mizutani M. C-23 hydroxylation by Arabidopsis CYP90C1 and CYP90D1 reveals a novel shortcut in brassinosteroid biosynthesis. Plant Cell. 2006 Nov;18(11):3275–88. PMID: 17138693; PMCID: PMC1693957.; Shimada Y, Goda H, Nakamura A, Takatsuto S, Fujioka S, Yoshida S. Organ-specific expression of brassinosteroid-biosynthetic genes and distribution of endogenous brassinosteroids in Arabidopsis. Plant Physiol. 2003 Jan;131(1):287–97. PMID: 12529536; PMCID: PMC166808.; Ephritikhine G, Pagant S, Fujioka S, Takatsuto S, Lapous D, Caboche M, Kendrick RE, Barbier-Brygoo H. The sax1 mutation defines a new locus involved in the brassinosteroid biosynthesis pathway in Arabidopsis thaliana. Plant J. 1999 May;18(3):315–20. doi: 10.1046/j.1365-313x.1999.00455.x. PMID: 10377996. |
| brassinosteroid biosynthesis I Accession ID: BioCyc:META_PWY-699 |
|
Ohnishi T, Szatmari AM, Watanabe B, Fujita S, Bancos S, Koncz C, Lafos M, Shibata K, Yokota T, Sakata K, Szekeres M, Mizutani M. C-23 hydroxylation by Arabidopsis CYP90C1 and CYP90D1 reveals a novel shortcut in brassinosteroid biosynthesis. Plant Cell. 2006 Nov;18(11):3275–88. PMID: 17138693; PMCID: PMC1693957.; Fujioka S, Yokota T. Biosynthesis and metabolism of brassinosteroids. Annu Rev Plant Biol. 2003;54():137–64. doi: 10.1146/annurev.arplant.54.031902.134921. PMID: 14502988.; Friedrichsen D, Chory J. Steroid signaling in plants: from the cell surface to the nucleus. Bioessays. 2001 Nov;23(11):1028–36. doi: 10.1002/bies.1148. PMID: 11746219.; Shimada Y, Fujioka S, Miyauchi N, Kushiro M, Takatsuto S, Nomura T, Yokota T, Kamiya Y, Bishop GJ, Yoshida S. Brassinosteroid-6-oxidases from Arabidopsis and tomato catalyze multiple C-6 oxidations in brassinosteroid biosynthesis. Plant Physiol. 2001 Jun;126(2):770–9. PMID: 11402205; PMCID: PMC111167.; Wang ZY, Seto H, Fujioka S, Yoshida S, Chory J. BRI1 is a critical component of a plasma-membrane receptor for plant steroids. Nature. 2001 Mar 15;410(6826):380–3. doi: 10.1038/35066597. PMID: 11268216.; Noguchi T, Fujioka S, Choe S, Takatsuto S, Tax FE, Yoshida S, Feldmann KA. Biosynthetic pathways of brassinolide in Arabidopsis. Plant Physiol. 2000 Sep;124(1):201–9. PMID: 10982435; PMCID: PMC59135.; Altmann T. A tale of dwarfs and drugs: brassinosteroids to the rescue. Trends Genet. 1998 Dec;14(12):490–5. doi: 10.1016/s0168-9525(98)01598-4. PMID: 9865154. |
| brassinosteroid biosynthesis I Accession ID: BioCyc:ARA_PWY-699 |
|
Ohnishi T, Szatmari AM, Watanabe B, Fujita S, Bancos S, Koncz C, Lafos M, Shibata K, Yokota T, Sakata K, Szekeres M, Mizutani M. C-23 hydroxylation by Arabidopsis CYP90C1 and CYP90D1 reveals a novel shortcut in brassinosteroid biosynthesis. Plant Cell. 2006 Nov;18(11):3275–88. PMID: 17138693; PMCID: PMC1693957.; Kim TW, Hwang JY, Kim YS, Joo SH, Chang SC, Lee JS, Takatsuto S, Kim SK. Arabidopsis CYP85A2, a cytochrome P450, mediates the Baeyer-Villiger oxidation of castasterone to brassinolide in brassinosteroid biosynthesis. Plant Cell. 2005 Aug;17(8):2397–412. PMID: 16024588; PMCID: PMC1182497.; Fujioka S, Yokota T. Biosynthesis and metabolism of brassinosteroids. Annu Rev Plant Biol. 2003;54():137–64. doi: 10.1146/annurev.arplant.54.031902.134921. PMID: 14502988.; Friedrichsen D, Chory J. Steroid signaling in plants: from the cell surface to the nucleus. Bioessays. 2001 Nov;23(11):1028–36. doi: 10.1002/bies.1148. PMID: 11746219.; Shimada Y, Fujioka S, Miyauchi N, Kushiro M, Takatsuto S, Nomura T, Yokota T, Kamiya Y, Bishop GJ, Yoshida S. Brassinosteroid-6-oxidases from Arabidopsis and tomato catalyze multiple C-6 oxidations in brassinosteroid biosynthesis. Plant Physiol. 2001 Jun;126(2):770–9. PMID: 11402205; PMCID: PMC111167.; Wang ZY, Seto H, Fujioka S, Yoshida S, Chory J. BRI1 is a critical component of a plasma-membrane receptor for plant steroids. Nature. 2001 Mar 15;410(6826):380–3. doi: 10.1038/35066597. PMID: 11268216.; Noguchi T, Fujioka S, Choe S, Takatsuto S, Tax FE, Yoshida S, Feldmann KA. Biosynthetic pathways of brassinolide in Arabidopsis. Plant Physiol. 2000 Sep;124(1):201–9. PMID: 10982435; PMCID: PMC59135.; Altmann T. A tale of dwarfs and drugs: brassinosteroids to the rescue. Trends Genet. 1998 Dec;14(12):490–5. doi: 10.1016/s0168-9525(98)01598-4. PMID: 9865154. |
| superpathway of C28 brassinosteroid biosynthesis Accession ID: PlantCyc:SPENNELLII_PWY-6544 |
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| brassinolide biosynthesis I Accession ID: PlantCyc:SPIRODELA_PWY-699 |
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| brassinolide biosynthesis I Accession ID: PlantCyc:AHALLERI_PWY-699 |
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| brassinolide biosynthesis I Accession ID: PlantCyc:AMBORELLA_PWY-699 |
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| brassinolide biosynthesis I Accession ID: PlantCyc:TOMATO_PWY-699 |
|
Kim TW, Hwang JY, Kim YS, Joo SH, Chang SC, Lee JS, Takatsuto S, Kim SK. Arabidopsis CYP85A2, a cytochrome P450, mediates the Baeyer-Villiger oxidation of castasterone to brassinolide in brassinosteroid biosynthesis. Plant Cell. 2005 Aug;17(8):2397–412. PMID: 16024588; PMCID: PMC1182497. |
| brassinolide biosynthesis I Accession ID: PlantCyc:TPARVULA_PWY-699 |
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| brassinolide biosynthesis I Accession ID: PlantCyc:BANANA_PWY-699 |
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| brassinosteroid biosynthesis I Accession ID: PlantCyc:BARLEY_PWY-699 |
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| superpathway of C28 brassinosteroid biosynthesis Accession ID: PlantCyc:BARLEY_PWY-6544 |
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| brassinolide biosynthesis I Accession ID: PlantCyc:BOLERACEA_CAPITATA_PWY-699 |
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| superpathway of C28 brassinosteroid biosynthesis Accession ID: PlantCyc:BRACHYPODIUM_PWY-6544 |
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| brassinolide biosynthesis I Accession ID: PlantCyc:BRAPA_FPSC_PWY-699 |
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| brassinosteroid biosynthesis I Accession ID: PlantCyc:BREADWHEAT_PWY-699 |
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| brassinolide biosynthesis I Accession ID: PlantCyc:BSTRICTA_PWY-699 |
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| superpathway of C28 brassinosteroid biosynthesis Accession ID: PlantCyc:CARIETINUM_ICC4958_PWY-6544 |
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| superpathway of C28 brassinosteroid biosynthesis Accession ID: PlantCyc:CCAPSULARIS_PWY-6544 |
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