Pathways Knowlegdes
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| Pathway | DOIs | Note |
|---|---|---|
| xylan biosynthesis Accession ID: BioCyc:ARA_PWY-5800 |
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Brown DM, Goubet F, Wong VW, Goodacre R, Stephens E, Dupree P, Turner SR. Comparison of five xylan synthesis mutants reveals new insight into the mechanisms of xylan synthesis. The Plant Journal. 2007 Oct 08;52(6):1154–68. doi: 10.1111/j.1365-313x.2007.03307.x. |
| cellulose and hemicellulose degradation (cellulolosome) Accession ID: BioCyc:SHIGELLA_PWY-6784 |
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| cellulose and hemicellulose degradation (cellulolosome) Accession ID: BioCyc:EREC_PWY-6784 |
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| (1,4)-β-D-xylan degradation Accession ID: BioCyc:META_PWY-6717 |
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Zhang F, Shi P, Bai Y, Luo H, Yuan T, Huang H, Yang P, Miao L, Yao B. An acid and highly thermostable xylanase from Phialophora sp. G5. Applied Microbiology and Biotechnology. 2010 Dec 01;89(6):1851–8. doi: 10.1007/s00253-010-3016-2. |
| xylan biosynthesis Accession ID: BioCyc:META_PWY-5800 |
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Kuroyama H, Tsumuraya Y. A xylosyltransferase that synthesizes beta-(1-->4)-xylans in wheat (Triticum aestivum L.) seedlings. Planta. 2001 Jun;213(2):231–40. doi: 10.1007/s004250000499. PMID: 11469588. |
| (1,4)-β-xylan degradation Accession ID: BioCyc:ARA_PWY-6717 |
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Xiong J-, Balland-Vanney M, Xie Z-, Schultze M, Kondorosi A, Kondorosi E, Staehelin C. Molecular cloning of a bifunctional -xylosidase/ -L-arabinosidase from alfalfa roots: heterologous expression in Medicago truncatula and substrate specificity of the purified enzyme. Journal of Experimental Botany. 2007 Jul 13;58(11):2799–810. doi: 10.1093/jxb/erm133.; Minic Z, Rihouey C, Do CT, Lerouge P, Jouanin L. Purification and characterization of enzymes exhibiting beta-D-xylosidase activities in stem tissues of Arabidopsis. Plant Physiol. 2004 Jun;135(2):867–78. PMID: 15181203; PMCID: PMC514122. |
| (1,4)-β-D-xylan degradation Accession ID: BioCyc:AGRO_PWY-6717 |
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| (1,4)-β-xylan degradation Accession ID: BioCyc:THAPS_PWY-6717 |
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| cellulose and hemicellulose degradation (cellulolosome) Accession ID: BioCyc:BTHE_PWY-6784 |
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| (1,3)-β-D-xylan degradation Accession ID: BioCyc:META_PWY-6789 |
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ARAKI T, TANI S, MAEDA K, HASHIKAWA S, NAKAGAWA H, MORISHITA T. Purification and Characterization of ß-1,3-Xylanase from a Marine Bacterium,Vibriosp. XY-214. Bioscience, Biotechnology, and Biochemistry. 1999 Jan;63(11):2017–9. doi: 10.1271/bbb.63.2017. |
| cellulose and hemicellulose degradation (cellulolosome) Accession ID: BioCyc:META_PWY-6784 |
|
Gold ND, Martin VJ. Global view of the Clostridium thermocellum cellulosome revealed by quantitative proteomic analysis. J Bacteriol. 2007 Oct;189(19):6787–95. PMID: 17644599; PMCID: PMC2045192.; Shoham Y, Lamed R, Bayer EA. The cellulosome concept as an efficient microbial strategy for the degradation of insoluble polysaccharides. Trends Microbiol. 1999 Jul;7(7):275–81. doi: 10.1016/s0966-842x(99)01533-4. PMID: 10390637. |
| (1,4)-β-D-xylan degradation Accession ID: BioCyc:AURANTIMONAS_PWY-6717 |
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| (1,4)-β-xylan degradation Accession ID: BioCyc:CLOSSAC_PWY-6717 |
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| superpathway of cellulose and hemicellulose degradation (cellulolosome) Accession ID: BioCyc:CLOSSAC_PWY-6784 |
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| Xylose Degradation I Accession ID: PathBank:SMP0002117 |
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| Metabolism and regulation Accession ID: Plant Reactome:R-OAU-2744345 |
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| Carbohydrate metabolism Accession ID: Plant Reactome:R-OAU-2883407 |
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| Carbohydrate metabolism Accession ID: Plant Reactome:R-TAE-2883407 |
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| Metabolism and regulation Accession ID: Plant Reactome:R-MES-2744345 |
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| Xylan biosynthesis Accession ID: Plant Reactome:R-MES-5654909 |
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Burton RA, Fincher GB. Evolution and development of cell walls in cereal grains. Front Plant Sci. 2014;5():456. PMID: 25309555; PMCID: PMC4161051.; Rennie EA, Scheller HV. Xylan biosynthesis. Curr Opin Biotechnol. 2014 Apr;26():100–7. doi: 10.1016/j.copbio.2013.11.013. PMID: 24679265.; Lee C, Teng Q, Zhong R, Yuan Y, Ye Z. Functional roles of rice glycosyltransferase family GT43 in xylan biosynthesis. Plant Signaling & Behavior. 2014 Feb 13;9(3):e27809. doi: 10.4161/psb.27809.; Chiniquy D, Varanasi P, Oh T, Harholt J, Katnelson J, Singh S, Auer M, Simmons B, Adams PD, Scheller HV, Ronald PC. Three Novel Rice Genes Closely Related to the Arabidopsis IRX9, IRX9L, and IRX14 Genes and Their Roles in Xylan Biosynthesis. Front Plant Sci. 2013;4():83. PMID: 23596448; PMCID: PMC3622038.; Chiniquy D, Sharma V, Schultink A, Baidoo EE, Rautengarten C, Cheng K, Carroll A, Ulvskov P, Harholt J, Keasling JD, Pauly M, Scheller HV, Ronald PC. XAX1 from glycosyltransferase family 61 mediates xylosyltransfer to rice xylan. Proc Natl Acad Sci U S A. 2012 Oct 16;109(42):17117–22. PMID: 23027943; PMCID: PMC3479505.; Anders N, Wilkinson MD, Lovegrove A, Freeman J, Tryfona T, Pellny TK, Weimar T, Mortimer JC, Stott K, Baker JM, Defoin-Platel M, Shewry PR, Dupree P, Mitchell RAC. Glycosyl transferases in family 61 mediate arabinofuranosyl transfer onto xylan in grasses. Proc. Natl. Acad. Sci. U.S.A. 2012 Jan 03;109(3):989–93. doi: 10.1073/pnas.1115858109. |