Pathways Knowlegdes

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Pathway DOIs Note
D-sorbitol degradation I

Accession ID: BioCyc:META_PWY-4101
  • 10.1007/s00253-010-3071-8
  • 10.1016/s0031-9422(00)00158-8
  • 10.1186/1754-6834-2-19
 Seiboth B, Metz B. Fungal arabinan and l-arabinose metabolism. Applied Microbiology and Biotechnology. 2011 Jan 07;89(6):1665–73. doi: 10.1007/s00253-010-3071-8.; Kubicek CP, Mikus M, Schuster A, Schmoll M, Seiboth B. Metabolic engineering strategies for the improvement of cellulase production by Hypocrea jecorina. Biotechnology for Biofuels and Bioproducts. 2009 Sep 01;2(1):19. doi: 10.1186/1754-6834-2-19.; Oura Y, Yamada K, Shiratake K, Yamaki S. Purification and characterization of a NAD+-dependent sorbitol dehydrogenase from Japanese pear fruit. Phytochemistry. 2000 Jul;54(6):567–72. doi: 10.1016/s0031-9422(00)00158-8. PMID: 10963448.
sucrose degradation V (sucrose α-glucosidase)

Accession ID: BioCyc:META_PWY66-373
  • 10.1016/s0021-9258(19)41116-2
 Conklin KA, Yamashiro KM, Gray GM. Human intestinal sucrase-isomaltase. Identification of free sucrase and isomaltase and cleavage of the hybrid into active distinct subunits. Journal of Biological Chemistry. 1975 Aug;250(15):5735–41. doi: 10.1016/s0021-9258(19)41116-2.
sucrose degradation III (sucrose invertase)

Accession ID: BioCyc:META_PWY-621
  • 10.1007/s004250000424
  • 10.1046/j.1365-313x.1993.04020367.x
 Ciereszko I, Johansson H, Hurry V, Kleczkowski LA. Phosphate status affects the gene expression, protein content and enzymatic activity of UDP-glucose pyrophosphorylase in wild-type and pho mutants of Arabidopsis. Planta. 2001 Mar;212(4):598–605. doi: 10.1007/s004250000424. PMID: 11525517.; Martin T, Frommer WB, Salanoubat M, Willmitzer L. Expression of an Arabidopsis sucrose synthase gene indicates a role in metabolization of sucrose both during phloem loading and in sink organs. The Plant Journal. 1993 Aug;4(2):367–77. doi: 10.1046/j.1365-313x.1993.04020367.x.
heterolactic fermentation

Accession ID: BioCyc:META_P122-PWY
  • 10.1006/abbi.1996.0058
  • 10.1007/s00203-006-0120-x
  • 10.1016/0005-2744(80)90036-4
  • 10.1111/j.1432-1033.1983.tb07165.x
 Helanto M, Aarnikunnas J, Palva A, Leisola M, Nyyssölä A. Characterization of genes involved in fructose utilization by Lactobacillus fermentum. Arch Microbiol. 2006 Jul;186(1):51–9. doi: 10.1007/s00203-006-0120-x. PMID: 16741753.; Levy HR, Vought VE, Yin X, Adams MJ. Identification of an arginine residue in the dual coenzyme-specific glucose-6-phosphate dehydrogenase from Leuconostoc mesenteroides that plays a key role in binding NADP+ but not NAD+. Arch Biochem Biophys. 1996 Feb 01;326(1):145–51. doi: 10.1006/abbi.1996.0058. PMID: 8579362.; Stournaras C, Maurer P, Kurz G. 6-phospho-D-gluconate dehydrogenase from Pseudomonas fluorescens. Properties and subunit structure. Eur J Biochem. 1983 Feb 01;130(2):391–6. doi: 10.1111/j.1432-1033.1983.tb07165.x. PMID: 6402366.; Ben-Bassat A, Goldberg I. Purification and properties of glucose-6-phosphate dehydrogenase (NADP+/NAD+) and 6-phosphogluconate dehydrogenase (NADP+/NAD+) from methanol-grown Pseudomonas C. Biochimica et Biophysica Acta (BBA) - Enzymology. 1980 Jan;611(1):1–10. doi: 10.1016/0005-2744(80)90036-4.
superpathway of sucrose and starch metabolism I (non-photosynthetic tissue)

Accession ID: BioCyc:ARA_PWYQT-4466
  • 10.1104/pp.106.083634
 Dai N, Petreikov M, Portnoy V, Katzir N, Pharr DM, Schaffer AA. Cloning and expression analysis of a UDP-galactose/glucose pyrophosphorylase from melon fruit provides evidence for the major metabolic pathway of galactose metabolism in raffinose oligosaccharide metabolizing plants. Plant Physiol. 2006 Sep;142(1):294–304. PMID: 16829585; PMCID: PMC1557607.
sucrose degradation to ethanol and lactate (anaerobic)

Accession ID: BioCyc:TRYPANO_PWY-3801		 -
galactose degradation III

Accession ID: BioCyc:TRYPANO_PWY-3821		 -
sucrose degradation III

Accession ID: BioCyc:PLASMO_PWY-621		 -
sucrose degradation IV (sucrose phosphorylase)

Accession ID: BioCyc:AGRO_PWY-5384		 -
sucrose degradation V (mammalian)

Accession ID: BioCyc:MOUSE_PWY66-373		 -
sucrose degradation

Accession ID: BioCyc:MOUSE_PWY3DJ-5523		 -
galactose degradation III

Accession ID: BioCyc:SMAN_PWY-3821		 -
sucrose degradation I (sucrose phosphotransferase)

Accession ID: BioCyc:BSUB_SUCUTIL-PWY		 -
D-sorbitol degradation I

Accession ID: BioCyc:BSUB_PWY-4101		 -
D-sorbitol degradation I

Accession ID: BioCyc:FLY_PWY-4101		 -
sucrose degradation V (mammalian)

Accession ID: BioCyc:THAPS_PWY66-373		 -
sucrose degradation I

Accession ID: BioCyc:CLOSSAC_SUCUTIL-PWY		 -
D-sorbitol degradation I

Accession ID: BioCyc:BTHE_PWY-4101		 -
sucrose degradation III (sucrose invertase)

Accession ID: BioCyc:CORYNE_PWY-621		 -
superpathway of anaerobic sucrose degradation

Accession ID: BioCyc:META_PWY-7345
  • 10.1104/pp.106.083634
 Dai N, Petreikov M, Portnoy V, Katzir N, Pharr DM, Schaffer AA. Cloning and expression analysis of a UDP-galactose/glucose pyrophosphorylase from melon fruit provides evidence for the major metabolic pathway of galactose metabolism in raffinose oligosaccharide metabolizing plants. Plant Physiol. 2006 Sep;142(1):294–304. PMID: 16829585; PMCID: PMC1557607.