Pathways Knowlegdes

Necessitatibus eius consequatur ex aliquid fuga eum quidem sint consectetur velit

Pathway DOIs Note
volatile esters biosynthesis (during fruit ripening)

Accession ID: BioCyc:META_PWY-6801
  • 10.1016/j.phytochem.2011.02.026
  • 10.1104/pp.006460
  • 10.1104/pp.104.045468
 Günther CS, Chervin C, Marsh KB, Newcomb RD, Souleyre EJ. Characterisation of two alcohol acyltransferases from kiwifruit (Actinidia spp.) reveals distinct substrate preferences. Phytochemistry. 2011 Jun;72(8):700–10. doi: 10.1016/j.phytochem.2011.02.026. PMID: 21450321.; Boatright J, Negre F, Chen X, Kish CM, Wood B, Peel G, Orlova I, Gang D, Rhodes D, Dudareva N. Understanding in vivo benzenoid metabolism in petunia petal tissue. Plant Physiol. 2004 Aug;135(4):1993–2011. PMID: 15286288; PMCID: PMC520771.; D'Auria JC, Chen F, Pichersky E. Characterization of an acyltransferase capable of synthesizing benzylbenzoate and other volatile esters in flowers and damaged leaves of Clarkia breweri. Plant Physiol. 2002 Sep;130(1):466–76. PMID: 12226525; PMCID: PMC166578.
volatile benzenoid biosynthesis I (ester formation)

Accession ID: BioCyc:ARA_PWY-4203
  • 10.1016/s0958-1669(03)00025-9
  • 10.1046/j.1365-313x.2003.01902.x
  • 10.1104/pp.006460
  • 10.1104/pp.104.049981
  • 10.1104/pp.116.2.599
 Dudareva N, Pichersky E, Gershenzon J. Biochemistry of plant volatiles. Plant Physiol. 2004 Aug;135(4):1893–902. PMID: 15326281; PMCID: PMC520761.; Chen F, D'Auria JC, Tholl D, Ross JR, Gershenzon J, Noel JP, Pichersky E. An Arabidopsis thaliana gene for methylsalicylate biosynthesis, identified by a biochemical genomics approach, has a role in defense. The Plant Journal. 2003 Nov 18;36(5):577–88. doi: 10.1046/j.1365-313x.2003.01902.x.; Degenhardt J, Gershenzon J, Baldwin IT, Kessler A. Attracting friends to feast on foes: engineering terpene emission to make crop plants more attractive to herbivore enemies. Curr Opin Biotechnol. 2003 Apr;14(2):169–76. doi: 10.1016/s0958-1669(03)00025-9. PMID: 12732318.; D'Auria JC, Chen F, Pichersky E. Characterization of an acyltransferase capable of synthesizing benzylbenzoate and other volatile esters in flowers and damaged leaves of Clarkia breweri. Plant Physiol. 2002 Sep;130(1):466–76. PMID: 12226525; PMCID: PMC166578.; Dudareva N, Raguso RA, Wang J, Ross JR, Pichersky E. Floral scent production in Clarkia breweri. III. Enzymatic synthesis and emission of benzenoid esters. Plant Physiol. 1998 Feb;116(2):599–604. PMID: 9489012; PMCID: PMC35117.
benzoate biosynthesis I (CoA-dependent, β-oxidative)

Accession ID: BioCyc:ARA_PWY-6443		 -
volatile benzenoid biosynthesis I (ester formation)

Accession ID: BioCyc:META_PWY-4203
  • 10.1016/s0958-1669(03)00025-9
  • 10.1046/j.1365-313x.2003.01902.x
  • 10.1104/pp.006460
  • 10.1104/pp.104.045468
  • 10.1104/pp.104.049981
  • 10.1104/pp.116.2.599
 Dudareva N, Pichersky E, Gershenzon J. Biochemistry of plant volatiles. Plant Physiol. 2004 Aug;135(4):1893–902. PMID: 15326281; PMCID: PMC520761.; Boatright J, Negre F, Chen X, Kish CM, Wood B, Peel G, Orlova I, Gang D, Rhodes D, Dudareva N. Understanding in vivo benzenoid metabolism in petunia petal tissue. Plant Physiol. 2004 Aug;135(4):1993–2011. PMID: 15286288; PMCID: PMC520771.; Chen F, D'Auria JC, Tholl D, Ross JR, Gershenzon J, Noel JP, Pichersky E. An Arabidopsis thaliana gene for methylsalicylate biosynthesis, identified by a biochemical genomics approach, has a role in defense. The Plant Journal. 2003 Nov 18;36(5):577–88. doi: 10.1046/j.1365-313x.2003.01902.x.; Degenhardt J, Gershenzon J, Baldwin IT, Kessler A. Attracting friends to feast on foes: engineering terpene emission to make crop plants more attractive to herbivore enemies. Curr Opin Biotechnol. 2003 Apr;14(2):169–76. doi: 10.1016/s0958-1669(03)00025-9. PMID: 12732318.; D'Auria JC, Chen F, Pichersky E. Characterization of an acyltransferase capable of synthesizing benzylbenzoate and other volatile esters in flowers and damaged leaves of Clarkia breweri. Plant Physiol. 2002 Sep;130(1):466–76. PMID: 12226525; PMCID: PMC166578.; Dudareva N, Raguso RA, Wang J, Ross JR, Pichersky E. Floral scent production in Clarkia breweri. III. Enzymatic synthesis and emission of benzenoid esters. Plant Physiol. 1998 Feb;116(2):599–604. PMID: 9489012; PMCID: PMC35117.
benzoate biosynthesis I (CoA-dependent, β-oxidative)

Accession ID: BioCyc:META_PWY-6443
  • 10.1007/s004250000377
  • 10.1104/pp.006460
  • 10.1104/pp.104.045468
  • 10.1104/pp.118.2.565
  • 10.1111/j.1365-313x.2009.03953.x
 Van Moerkercke A, Schauvinhold I, Pichersky E, Haring MA, Schuurink RC. A plant thiolase involved in benzoic acid biosynthesis and volatile benzenoid production. Plant J. 2009 Oct;60(2):292–302. doi: 10.1111/j.1365-313x.2009.03953.x. PMID: 19659733.; Boatright J, Negre F, Chen X, Kish CM, Wood B, Peel G, Orlova I, Gang D, Rhodes D, Dudareva N. Understanding in vivo benzenoid metabolism in petunia petal tissue. Plant Physiol. 2004 Aug;135(4):1993–2011. PMID: 15286288; PMCID: PMC520771.; D'Auria JC, Chen F, Pichersky E. Characterization of an acyltransferase capable of synthesizing benzylbenzoate and other volatile esters in flowers and damaged leaves of Clarkia breweri. Plant Physiol. 2002 Sep;130(1):466–76. PMID: 12226525; PMCID: PMC166578.; Jarvis AP, Schaaf O, Oldham NJ. 3-hydroxy-3-phenylpropanoic acid is an intermediate in the biosynthesis of benzoic acid and salicylic acid but benzaldehyde is not. Planta. 2000 Dec;212(1):119–26. doi: 10.1007/s004250000377. PMID: 11219576.; Ribnicky, Shulaev, Raskin. Intermediates of salicylic acid biosynthesis in tobacco . Plant Physiol. 1998 Oct;118(2):565–72. PMID: 9765542; PMCID: PMC34832.
salicortin biosynthesis

Accession ID: BioCyc:META_PWY-6763
  • 10.1007/s10886-010-9757-7
  • 10.1016/s0021-9258(18)82062-2
  • 10.1104/pp.006460
  • 10.1104/pp.104.045468
 Babst BA, Harding SA, Tsai C. Biosynthesis of Phenolic Glycosides from Phenylpropanoid and Benzenoid Precursors in Populus. Journal of Chemical Ecology. 2010 Feb 23;36(3):286–97. doi: 10.1007/s10886-010-9757-7.; Boatright J, Negre F, Chen X, Kish CM, Wood B, Peel G, Orlova I, Gang D, Rhodes D, Dudareva N. Understanding in vivo benzenoid metabolism in petunia petal tissue. Plant Physiol. 2004 Aug;135(4):1993–2011. PMID: 15286288; PMCID: PMC520771.; D'Auria JC, Chen F, Pichersky E. Characterization of an acyltransferase capable of synthesizing benzylbenzoate and other volatile esters in flowers and damaged leaves of Clarkia breweri. Plant Physiol. 2002 Sep;130(1):466–76. PMID: 12226525; PMCID: PMC166578.; Shaw JP, Rekik M, Schwager F, Harayama S. Kinetic studies on benzyl alcohol dehydrogenase encoded by TOL plasmid pWWO. A member of the zinc-containing long chain alcohol dehydrogenase family. Journal of Biological Chemistry. 1993 May;268(15):10842–50. doi: 10.1016/s0021-9258(18)82062-2.
benzoate biosynthesis I (CoA-dependent, β-oxidative)

Accession ID: PlantCyc:ZMARINA_PWY-6443		 -
benzoate biosynthesis I (CoA-dependent, β-oxidative)

Accession ID: PlantCyc:CASSAVA_PWY-6443		 -
benzoate biosynthesis I (CoA-dependent, β-oxidative)

Accession ID: PlantCyc:CRUBELLA_PWY-6443		 -
benzoate biosynthesis I (CoA-dependent, β-oxidative)

Accession ID: PlantCyc:DROTUNDATA_PWY-6443		 -
benzoate biosynthesis I (CoA-dependent, β-oxidative)

Accession ID: PlantCyc:EUROPEANPEAR_PWY-6443		 -
benzoate biosynthesis I (CoA-dependent, β-oxidative)

Accession ID: PlantCyc:POPLAR_PWY-6443		 -
benzoate biosynthesis I (CoA-dependent, β-oxidative)

Accession ID: PlantCyc:POTATO_PWY-6443		 -
benzoate biosynthesis I (CoA-dependent, β-oxidative)

Accession ID: PlantCyc:WHEATA_PWY-6443		 -
volatile benzenoid biosynthesis I (ester formation)

Accession ID: PlantCyc:ZMARINA_PWY-4203		 -
benzoate biosynthesis I (CoA-dependent, β-oxidative)

Accession ID: PlantCyc:BRACHYPODIUM_PWY-6443		 -
benzoate biosynthesis I (CoA-dependent, β-oxidative)

Accession ID: PlantCyc:CHINESECABBAGE_PWY-6443		 -
benzoate biosynthesis I (CoA-dependent, β-oxidative)

Accession ID: PlantCyc:VALLEYOAK_PWY-6443		 -
benzoate biosynthesis I (CoA-dependent, β-oxidative)

Accession ID: PlantCyc:OILPALM_PWY-6443		 -
benzoate biosynthesis I (CoA-dependent, β-oxidative)

Accession ID: PlantCyc:LJAPONICUS_PWY-6443		 -