Pathways Knowlegdes

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Pathway DOIs Note
ammonia oxidation III

Accession ID: BioCyc:META_PWY-2242
  • 10.1016/0378-1097(96)00121-8
 Ono Y, Makino N, Hoshino Y, Shoji K, Yamanaka T. An iron dioxygenase from Alcaligenes faecalis catalyzing the oxidation of pyruvic oxime to nitrite. FEMS Microbiol Lett. 1996 Jun 01;139(2-3):103–8. doi: 10.1111/j.1574-6968.1996.tb08187.x. PMID: 8674977.
ammonia oxidation I (aerobic)

Accession ID: BioCyc:META_AMMOXID-PWY
  • 10.1016/s0021-9258(19)68518-2
 Hollocher TC, Tate ME, Nicholas DJ. Oxidation of ammonia by Nitrosomonas europaea. Definite 18O-tracer evidence that hydroxylamine formation involves a monooxygenase. Journal of Biological Chemistry. 1981 Nov;256(21):10834–6. doi: 10.1016/s0021-9258(19)68518-2.
superpathway of L-asparagine biosynthesis

Accession ID: BioCyc:META_PWY0-1325		 -
L-glutamate degradation X

Accession ID: BioCyc:META_PWY-5766
  • 10.1093/oxfordjournals.jbchem.a131480
 Kimura K, Miyakawa A, Imai T, Sasakawa T. Glutamate dehydrogenase from Bacillus subtilis PCI 219. I. Purification and properties. J Biochem. 1977 Feb;81(2):467–76. doi: 10.1093/oxfordjournals.jbchem.a131480. PMID: 14949.
nitrifier denitrification

Accession ID: BioCyc:META_PWY-7084
  • 10.1042/bj1261181
  • 10.1128/aem.49.5.1134-1141.1985
 Poth M, Focht DD. 15 N Kinetic Analysis of N 2 O Production by Nitrosomonas europaea : an Examination of Nitrifier Denitrification. Appl Environ Microbiol. 1985 May;49(5):1134–41. doi: 10.1128/aem.49.5.1134-1141.1985.; Ritchie GA, Nicholas DJ. Identification of the sources of nitrous oxide produced by oxidative and reductive processes in Nitrosomonas europaea. Biochem J. 1972 Mar;126(5):1181–91. PMID: 5073730; PMCID: PMC1178541.
pyridine nucleotide cycling (plants)

Accession ID: BioCyc:LEISH_PWY-5381		 -
pyrimidine deoxyribonucleotides de novo biosynthesis I

Accession ID: BioCyc:LEISH_PWY0-166		 -
salvage pathways of pyrimidine ribonucleotides

Accession ID: BioCyc:LEISH_PWY0-163		 -
cysteine biosynthesis/homocysteine degradation

Accession ID: BioCyc:LEISH_HOMOCYSDEGR-PWY
  • 10.1016/j.molbiopara.2006.11.013
 Reguera RM, Redondo CM, Pérez-Pertejo Y, Balaña-Fouce R. S-Adenosylmethionine in protozoan parasites: Functions, synthesis and regulation. Molecular and Biochemical Parasitology. 2007 Mar;152(1):1–10. doi: 10.1016/j.molbiopara.2006.11.013.
methionine biosynthesis

Accession ID: BioCyc:LEISH_PWY3IU-196
  • 10.1016/j.pt.2007.02.004
 Opperdoes FR, Coombs GH. Metabolism of Leishmania: proven and predicted. Trends Parasitol. 2007 Apr;23(4):149–58. doi: 10.1016/j.pt.2007.02.004. PMID: 17320480.
asparagine degradation

Accession ID: BioCyc:LEISH_PWY3IU-282		 -
glycine cleavage complex

Accession ID: BioCyc:LEISH_GLYCLEAV-PWY
  • 10.1074/jbc.m708014200
 Scott DA, Hickerson SM, Vickers TJ, Beverley SM. The Role of the Mitochondrial Glycine Cleavage Complex in the Metabolism and Virulence of the Protozoan Parasite Leishmania major. Journal of Biological Chemistry. 2008 Jan;283(1):155–65. doi: 10.1074/jbc.m708014200.
glutamate degradation II

Accession ID: BioCyc:TRYPANO_GLUTDEG-PWY		 -
arginine degradation VII

Accession ID: BioCyc:TRYPANO_ARGININE-DEG1-PWY		 -
purine and pyrimidine metabolism

Accession ID: BioCyc:TRYPANO_P1-PWY		 -
aspartate superpathway

Accession ID: BioCyc:TRYPANO_PWY0-781		 -
superpathway of histidine, purine, and pyrimidine biosynthesis

Accession ID: BioCyc:TRYPANO_PRPP-PWY		 -
guanosine nucleotides de novo biosynthesis

Accession ID: BioCyc:TRYPANO_PWY-6125		 -
superpathway of lysine, threonine and methionine biosynthesis II

Accession ID: BioCyc:TRYPANO_PWY-724		 -
isoleucine biosynthesis I

Accession ID: BioCyc:TRYPANO_PWY-3001		 -