Pathways Knowlegdes
Necessitatibus eius consequatur ex aliquid fuga eum quidem sint consectetur velit
| Pathway | DOIs | Note |
|---|---|---|
| diterpene phytoalexins precursors biosynthesis Accession ID: BioCyc:META_PWY-2981 |
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Wang Q, Hillwig ML, Peters RJ. CYP99A3: functional identification of a diterpene oxidase from the momilactone biosynthetic gene cluster in rice. The Plant Journal. 2010 Nov 17;65(1):87–95. doi: 10.1111/j.1365-313x.2010.04408.x.; Chang YJ, Kim BR, Kim SU. Metabolic flux analysis of diterpene biosynthesis pathway in rice. Biotechnol Lett. 2005 Sep;27(18):1375–80. doi: 10.1007/s10529-005-3684-7. PMID: 16215852.; Otomo K, Kenmoku H, Oikawa H, König WA, Toshima H, Mitsuhashi W, Yamane H, Sassa T, Toyomasu T. Biological functions of ent- and syn-copalyl diphosphate synthases in rice: key enzymes for the branch point of gibberellin and phytoalexin biosynthesis. The Plant Journal. 2004 Jul 30;39(6):886–93. doi: 10.1111/j.1365-313x.2004.02175.x.; Nemoto T, Cho EM, Okada A, Okada K, Otomo K, Kanno Y, Toyomasu T, Mitsuhashi W, Sassa T, Minami E, Shibuya N, Nishiyama M, Nojiri H, Yamane H. Stemar-13-ene synthase, a diterpene cyclase involved in the biosynthesis of the phytoalexin oryzalexin S in rice. FEBS Lett. 2004 Jul 30;571(1-3):182–6. doi: 10.1016/j.febslet.2004.07.002. PMID: 15280039.; Cho E, Okada A, Kenmoku H, Otomo K, Toyomasu T, Mitsuhashi W, Sassa T, Yajima A, Yabuta G, Mori K, Oikawa H, Toshima H, Shibuya N, Nojiri H, Omori T, Nishiyama M, Yamane H. Molecular cloning and characterization of a cDNA encoding ent-cassa-12,15-diene synthase, a putative diterpenoid phytoalexin biosynthetic enzyme, from suspension-cultured rice cells treated with a chitin elicitor. The Plant Journal. 2003 Nov 03;37(1):1–8. doi: 10.1046/j.1365-313x.2003.01926.x. |
| momilactone A biosynthesis Accession ID: BioCyc:META_PWY-7477 |
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Wang Q, Hillwig ML, Okada K, Yamazaki K, Wu Y, Swaminathan S, Yamane H, Peters RJ. Characterization of CYP76M5–8 Indicates Metabolic Plasticity within a Plant Biosynthetic Gene Cluster. Journal of Biological Chemistry. 2012 Feb;287(9):6159–68. doi: 10.1074/jbc.m111.305599.; Kato-Noguchi H. The chemical cross talk between rice and barnyardgrass. Plant Signaling & Behavior. 2011 Aug;6(8):1207–9. doi: 10.4161/psb.6.8.15869.; Wang Q, Hillwig ML, Peters RJ. CYP99A3: functional identification of a diterpene oxidase from the momilactone biosynthetic gene cluster in rice. The Plant Journal. 2010 Nov 17;65(1):87–95. doi: 10.1111/j.1365-313x.2010.04408.x.; Osbourn A. Gene Clusters for Secondary Metabolic Pathways: An Emerging Theme in Plant Biology. 2010 Oct 04;154(2):531–5. doi: 10.1104/pp.110.161315.; Hasegawa M, Mitsuhara I, Seo S, Imai T, Koga J, Okada K, Yamane H, Ohashi Y. Phytoalexin accumulation in the interaction between rice and the blast fungus. Mol Plant Microbe Interact. 2010 Aug;23(8):1000–11. doi: 10.1094/mpmi-23-8-1000. PMID: 20615111.; Okada A, Okada K, Miyamoto K, Koga J, Shibuya N, Nojiri H, Yamane H. OsTGAP1, a bZIP Transcription Factor, Coordinately Regulates the Inductive Production of Diterpenoid Phytoalexins in Rice. Journal of Biological Chemistry. 2009 Sep;284(39):26510–8. doi: 10.1074/jbc.m109.036871.; Osbourn AE, Field B. Operons. Cellular and Molecular Life Sciences. 2009 Aug 07;66(23):3755–75. doi: 10.1007/s00018-009-0114-3.; Kato-Noguchi H. Secretion of momilactone A and B by the mossHypnum plumaeforme. Plant Signaling & Behavior. 2009 Aug;4(8):737–9. doi: 10.4161/psb.4.8.9080.; Fischbach MA, Walsh CT, Clardy J. The evolution of gene collectives: How natural selection drives chemical innovation. Proc Natl Acad Sci U S A. 2008 Mar 25;105(12):4601–8. PMID: 18216259; PMCID: PMC2290807.; Shimizu T, Jikumaru Y, Okada A, Okada K, Koga J, Umemura K, Minami E, Shibuya N, Hasegawa M, Kodama O, Nojiri H, Yamane H. Effects of a bile acid elicitor, cholic acid, on the biosynthesis of diterpenoid phytoalexins in suspension-cultured rice cells. Phytochemistry. 2008 Feb;69(4):973–81. doi: 10.1016/j.phytochem.2007.10.005. PMID: 18045629.; NOZAKI H, HAYASHI K, NISHIMURA N, KAWAIDE H, MATSUO A, TAKAOKA D. Momilactone A and B as Allelochemicals from MossHypnum plumaeforme: First Occurrence in Bryophytes. Bioscience, Biotechnology, and Biochemistry. 2007 Dec 23;71(12):3127–30. doi: 10.1271/bbb.70625.; Shimura K, Okada A, Okada K, Jikumaru Y, Ko K, Toyomasu T, Sassa T, Hasegawa M, Kodama O, Shibuya N, Koga J, Nojiri H, Yamane H. Identification of a Biosynthetic Gene Cluster in Rice for Momilactones. Journal of Biological Chemistry. 2007 Nov;282(47):34013–8. doi: 10.1074/jbc.m703344200.; Kato-Noguchi H, Kujime H, Ino T. UV-induced momilactone B accumulation in rice rhizosphere. J Plant Physiol. 2007 Nov;164(11):1548–51. doi: 10.1016/j.jplph.2006.12.008. PMID: 17498837.; Xu M, Wilderman PR, Morrone D, Xu J, Roy A, Margis-Pinheiro M, Upadhyaya NM, Coates RM, Peters RJ. Functional characterization of the rice kaurene synthase-like gene family. Phytochemistry. 2007 Feb;68(3):312–26. doi: 10.1016/j.phytochem.2006.10.016. PMID: 17141283.; Peters RJ. Uncovering the complex metabolic network underlying diterpenoid phytoalexin biosynthesis in rice and other cereal crop plants. Phytochemistry. 2006 Nov;67(21):2307–17. doi: 10.1016/j.phytochem.2006.08.009. PMID: 16956633.; Prisic S, Xu M, Wilderman PR, Peters RJ. Rice contains two disparate ent-copalyl diphosphate synthases with distinct metabolic functions. Plant Physiol. 2004 Dec;136(4):4228–36. PMID: 15542489; PMCID: PMC535852.; Otomo K, Kenmoku H, Oikawa H, König WA, Toshima H, Mitsuhashi W, Yamane H, Sassa T, Toyomasu T. Biological functions of ent- and syn-copalyl diphosphate synthases in rice: key enzymes for the branch point of gibberellin and phytoalexin biosynthesis. The Plant Journal. 2004 Jul 30;39(6):886–93. doi: 10.1111/j.1365-313x.2004.02175.x.; Kato-Noguchi H. Allelopathic substance in rice root exudates: rediscovery of momilactone B as an allelochemical. J Plant Physiol. 2004 Mar;161(3):271–6. doi: 10.1078/0176-1617-01188. PMID: 15077625.; Kato-Noguchi H, Ino T. Rice seedlings release momilactone B into the environment. Phytochemistry. 2003 Jul;63(5):551–4. doi: 10.1016/s0031-9422(03)00194-8. PMID: 12809715.; Germain J, Deslongchamps P. Total synthesis of (+/-)-momilactone A. J Org Chem. 2002 Jul 26;67(15):5269–78. doi: 10.1021/jo025873l. PMID: 12126415.; Kato-Noguchi H, Ino T, Sata N, Yamamura S. Isolation and identification of a potent allelopathic substance in rice root exudates. Physiol Plant. 2002 Jul;115(3):401–5. doi: 10.1034/j.1399-3054.2002.1150310.x. PMID: 12081533.; Nojiri H, Sugimori M, Yamane H, Nishimura Y, Yamada A, Shibuya N, Kodama O, Murofushi N, Omori T. Involvement of Jasmonic Acid in Elicitor-Induced Phytoalexin Production in Suspension-Cultured Rice Cells. Plant Physiol. 1996 Feb;110(2):387–92. PMID: 12226190; PMCID: PMC157731. |
| Metabolism and regulation Accession ID: Plant Reactome:R-OAU-2744345 |
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| Secondary metabolism Accession ID: Plant Reactome:R-TAE-2744344 |
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| Metabolism and regulation Accession ID: Plant Reactome:R-MES-2744345 |
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| Metabolism and regulation Accession ID: Plant Reactome:R-TDI-2744345 |
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| Metabolism and regulation Accession ID: Plant Reactome:R-DRO-2744345 |
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| Momilactone biosynthesis Accession ID: Plant Reactome:R-OMI-1119308 |
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Wang Q, Hillwig ML, Peters RJ. CYP99A3: functional identification of a diterpene oxidase from the momilactone biosynthetic gene cluster in rice. The Plant Journal. 2010 Nov 17;65(1):87–95. doi: 10.1111/j.1365-313x.2010.04408.x.; Shimura K, Okada A, Okada K, Jikumaru Y, Ko K, Toyomasu T, Sassa T, Hasegawa M, Kodama O, Shibuya N, Koga J, Nojiri H, Yamane H. Identification of a Biosynthetic Gene Cluster in Rice for Momilactones. Journal of Biological Chemistry. 2007 Nov;282(47):34013–8. doi: 10.1074/jbc.m703344200.; KANNO Y, OTOMO K, KENMOKU H, MITSUHASHI W, YAMANE H, OIKAWA H, TOSHIMA H, MATSUOKA M, SASSA T, TOYOMASU T. Characterization of a Rice Gene Family Encoding Type-A Diterpene Cyclases. Bioscience, Biotechnology, and Biochemistry. 2006 Jul 23;70(7):1702–10. doi: 10.1271/bbb.60044.; Mohan RS, Yee NK, Coates RM, Ren YY, Stamenkovic P, Mendez I, West CA. Biosynthesis of cyclic diterpene hydrocarbons in rice cell suspensions: conversion of 9,10-syn-labda-8(17),13-dienyl diphosphate to 9beta-pimara-7,15-diene and stemar-13-ene. Arch Biochem Biophys. 1996 Jun 01;330(1):33–47. doi: 10.1006/abbi.1996.0223. PMID: 8651702. |
| Metabolism and regulation Accession ID: Plant Reactome:R-PTI-2744345 |
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| Momilactone biosynthesis Accession ID: Plant Reactome:R-PTI-1119308 |
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Wang Q, Hillwig ML, Peters RJ. CYP99A3: functional identification of a diterpene oxidase from the momilactone biosynthetic gene cluster in rice. The Plant Journal. 2010 Nov 17;65(1):87–95. doi: 10.1111/j.1365-313x.2010.04408.x.; Shimura K, Okada A, Okada K, Jikumaru Y, Ko K, Toyomasu T, Sassa T, Hasegawa M, Kodama O, Shibuya N, Koga J, Nojiri H, Yamane H. Identification of a Biosynthetic Gene Cluster in Rice for Momilactones. Journal of Biological Chemistry. 2007 Nov;282(47):34013–8. doi: 10.1074/jbc.m703344200.; KANNO Y, OTOMO K, KENMOKU H, MITSUHASHI W, YAMANE H, OIKAWA H, TOSHIMA H, MATSUOKA M, SASSA T, TOYOMASU T. Characterization of a Rice Gene Family Encoding Type-A Diterpene Cyclases. Bioscience, Biotechnology, and Biochemistry. 2006 Jul 23;70(7):1702–10. doi: 10.1271/bbb.60044.; Mohan RS, Yee NK, Coates RM, Ren YY, Stamenkovic P, Mendez I, West CA. Biosynthesis of cyclic diterpene hydrocarbons in rice cell suspensions: conversion of 9,10-syn-labda-8(17),13-dienyl diphosphate to 9beta-pimara-7,15-diene and stemar-13-ene. Arch Biochem Biophys. 1996 Jun 01;330(1):33–47. doi: 10.1006/abbi.1996.0223. PMID: 8651702. |
| Metabolism and regulation Accession ID: Plant Reactome:R-GMA-2744345 |
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| Secondary metabolism Accession ID: Plant Reactome:R-GMA-2744344 |
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| Metabolism and regulation Accession ID: Plant Reactome:R-PDA-2744345 |
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| Metabolism and regulation Accession ID: Plant Reactome:R-PVU-2744345 |
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| Momilactone biosynthesis Accession ID: Plant Reactome:R-PVU-1119308 |
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Wang Q, Hillwig ML, Peters RJ. CYP99A3: functional identification of a diterpene oxidase from the momilactone biosynthetic gene cluster in rice. The Plant Journal. 2010 Nov 17;65(1):87–95. doi: 10.1111/j.1365-313x.2010.04408.x.; Shimura K, Okada A, Okada K, Jikumaru Y, Ko K, Toyomasu T, Sassa T, Hasegawa M, Kodama O, Shibuya N, Koga J, Nojiri H, Yamane H. Identification of a Biosynthetic Gene Cluster in Rice for Momilactones. Journal of Biological Chemistry. 2007 Nov;282(47):34013–8. doi: 10.1074/jbc.m703344200.; KANNO Y, OTOMO K, KENMOKU H, MITSUHASHI W, YAMANE H, OIKAWA H, TOSHIMA H, MATSUOKA M, SASSA T, TOYOMASU T. Characterization of a Rice Gene Family Encoding Type-A Diterpene Cyclases. Bioscience, Biotechnology, and Biochemistry. 2006 Jul 23;70(7):1702–10. doi: 10.1271/bbb.60044.; Mohan RS, Yee NK, Coates RM, Ren YY, Stamenkovic P, Mendez I, West CA. Biosynthesis of cyclic diterpene hydrocarbons in rice cell suspensions: conversion of 9,10-syn-labda-8(17),13-dienyl diphosphate to 9beta-pimara-7,15-diene and stemar-13-ene. Arch Biochem Biophys. 1996 Jun 01;330(1):33–47. doi: 10.1006/abbi.1996.0223. PMID: 8651702. |
| Momilactone biosynthesis Accession ID: Plant Reactome:R-BNA-1119308 |
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Wang Q, Hillwig ML, Peters RJ. CYP99A3: functional identification of a diterpene oxidase from the momilactone biosynthetic gene cluster in rice. The Plant Journal. 2010 Nov 17;65(1):87–95. doi: 10.1111/j.1365-313x.2010.04408.x.; Shimura K, Okada A, Okada K, Jikumaru Y, Ko K, Toyomasu T, Sassa T, Hasegawa M, Kodama O, Shibuya N, Koga J, Nojiri H, Yamane H. Identification of a Biosynthetic Gene Cluster in Rice for Momilactones. Journal of Biological Chemistry. 2007 Nov;282(47):34013–8. doi: 10.1074/jbc.m703344200.; KANNO Y, OTOMO K, KENMOKU H, MITSUHASHI W, YAMANE H, OIKAWA H, TOSHIMA H, MATSUOKA M, SASSA T, TOYOMASU T. Characterization of a Rice Gene Family Encoding Type-A Diterpene Cyclases. Bioscience, Biotechnology, and Biochemistry. 2006 Jul 23;70(7):1702–10. doi: 10.1271/bbb.60044.; Mohan RS, Yee NK, Coates RM, Ren YY, Stamenkovic P, Mendez I, West CA. Biosynthesis of cyclic diterpene hydrocarbons in rice cell suspensions: conversion of 9,10-syn-labda-8(17),13-dienyl diphosphate to 9beta-pimara-7,15-diene and stemar-13-ene. Arch Biochem Biophys. 1996 Jun 01;330(1):33–47. doi: 10.1006/abbi.1996.0223. PMID: 8651702. |
| Momilactone biosynthesis Accession ID: Plant Reactome:R-BRA-1119308 |
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Wang Q, Hillwig ML, Peters RJ. CYP99A3: functional identification of a diterpene oxidase from the momilactone biosynthetic gene cluster in rice. The Plant Journal. 2010 Nov 17;65(1):87–95. doi: 10.1111/j.1365-313x.2010.04408.x.; Shimura K, Okada A, Okada K, Jikumaru Y, Ko K, Toyomasu T, Sassa T, Hasegawa M, Kodama O, Shibuya N, Koga J, Nojiri H, Yamane H. Identification of a Biosynthetic Gene Cluster in Rice for Momilactones. Journal of Biological Chemistry. 2007 Nov;282(47):34013–8. doi: 10.1074/jbc.m703344200.; KANNO Y, OTOMO K, KENMOKU H, MITSUHASHI W, YAMANE H, OIKAWA H, TOSHIMA H, MATSUOKA M, SASSA T, TOYOMASU T. Characterization of a Rice Gene Family Encoding Type-A Diterpene Cyclases. Bioscience, Biotechnology, and Biochemistry. 2006 Jul 23;70(7):1702–10. doi: 10.1271/bbb.60044.; Mohan RS, Yee NK, Coates RM, Ren YY, Stamenkovic P, Mendez I, West CA. Biosynthesis of cyclic diterpene hydrocarbons in rice cell suspensions: conversion of 9,10-syn-labda-8(17),13-dienyl diphosphate to 9beta-pimara-7,15-diene and stemar-13-ene. Arch Biochem Biophys. 1996 Jun 01;330(1):33–47. doi: 10.1006/abbi.1996.0223. PMID: 8651702. |
| Momilactone biosynthesis Accession ID: Plant Reactome:R-JCU-1119308 |
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Wang Q, Hillwig ML, Peters RJ. CYP99A3: functional identification of a diterpene oxidase from the momilactone biosynthetic gene cluster in rice. The Plant Journal. 2010 Nov 17;65(1):87–95. doi: 10.1111/j.1365-313x.2010.04408.x.; Shimura K, Okada A, Okada K, Jikumaru Y, Ko K, Toyomasu T, Sassa T, Hasegawa M, Kodama O, Shibuya N, Koga J, Nojiri H, Yamane H. Identification of a Biosynthetic Gene Cluster in Rice for Momilactones. Journal of Biological Chemistry. 2007 Nov;282(47):34013–8. doi: 10.1074/jbc.m703344200.; KANNO Y, OTOMO K, KENMOKU H, MITSUHASHI W, YAMANE H, OIKAWA H, TOSHIMA H, MATSUOKA M, SASSA T, TOYOMASU T. Characterization of a Rice Gene Family Encoding Type-A Diterpene Cyclases. Bioscience, Biotechnology, and Biochemistry. 2006 Jul 23;70(7):1702–10. doi: 10.1271/bbb.60044.; Mohan RS, Yee NK, Coates RM, Ren YY, Stamenkovic P, Mendez I, West CA. Biosynthesis of cyclic diterpene hydrocarbons in rice cell suspensions: conversion of 9,10-syn-labda-8(17),13-dienyl diphosphate to 9beta-pimara-7,15-diene and stemar-13-ene. Arch Biochem Biophys. 1996 Jun 01;330(1):33–47. doi: 10.1006/abbi.1996.0223. PMID: 8651702. |
| Momilactone biosynthesis Accession ID: Plant Reactome:R-SIT-1119308 |
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Wang Q, Hillwig ML, Peters RJ. CYP99A3: functional identification of a diterpene oxidase from the momilactone biosynthetic gene cluster in rice. The Plant Journal. 2010 Nov 17;65(1):87–95. doi: 10.1111/j.1365-313x.2010.04408.x.; Shimura K, Okada A, Okada K, Jikumaru Y, Ko K, Toyomasu T, Sassa T, Hasegawa M, Kodama O, Shibuya N, Koga J, Nojiri H, Yamane H. Identification of a Biosynthetic Gene Cluster in Rice for Momilactones. Journal of Biological Chemistry. 2007 Nov;282(47):34013–8. doi: 10.1074/jbc.m703344200.; KANNO Y, OTOMO K, KENMOKU H, MITSUHASHI W, YAMANE H, OIKAWA H, TOSHIMA H, MATSUOKA M, SASSA T, TOYOMASU T. Characterization of a Rice Gene Family Encoding Type-A Diterpene Cyclases. Bioscience, Biotechnology, and Biochemistry. 2006 Jul 23;70(7):1702–10. doi: 10.1271/bbb.60044.; Mohan RS, Yee NK, Coates RM, Ren YY, Stamenkovic P, Mendez I, West CA. Biosynthesis of cyclic diterpene hydrocarbons in rice cell suspensions: conversion of 9,10-syn-labda-8(17),13-dienyl diphosphate to 9beta-pimara-7,15-diene and stemar-13-ene. Arch Biochem Biophys. 1996 Jun 01;330(1):33–47. doi: 10.1006/abbi.1996.0223. PMID: 8651702. |
| Metabolism and regulation Accession ID: Plant Reactome:R-CSI-2744345 |
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