Pathways Knowlegdes

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Pathway DOIs Note
phenylpropanoid biosynthesis

Accession ID: BioCyc:ARA_PWY-361
  • 10.1016/s1369-5266(02)00257-1
  • 10.1146/annurev.arplant.54.031902.134938
 Boerjan W, Ralph J, Baucher M. Lignin biosynthesis. Annu Rev Plant Biol. 2003;54():519–46. doi: 10.1146/annurev.arplant.54.031902.134938. PMID: 14503002.; Humphreys JM, Chapple C. Rewriting the lignin roadmap. Curr Opin Plant Biol. 2002 Jun;5(3):224–9. doi: 10.1016/s1369-5266(02)00257-1. PMID: 11960740.
phenylpropanoid biosynthesis

Accession ID: BioCyc:META_PWY-361
  • 10.1016/s1369-5266(02)00257-1
  • 10.1146/annurev.arplant.54.031902.134938
 Boerjan W, Ralph J, Baucher M. Lignin biosynthesis. Annu Rev Plant Biol. 2003;54():519–46. doi: 10.1146/annurev.arplant.54.031902.134938. PMID: 14503002.; Humphreys JM, Chapple C. Rewriting the lignin roadmap. Curr Opin Plant Biol. 2002 Jun;5(3):224–9. doi: 10.1016/s1369-5266(02)00257-1. PMID: 11960740.
arabidopyrone biosynthesis

Accession ID: BioCyc:META_PWY-7682
  • 10.1007/s00425-012-1593-2
  • 10.1016/j.pbi.2012.05.005
  • 10.1016/s0031-9422(03)00300-5
  • 10.1016/s1369-5266(02)00257-1
  • 10.1073/pnas.95.12.6619
  • 10.1093/mp/ssp106
  • 10.1104/pp.15.00294
  • 10.1111/j.1469-8137.2010.03327.x
  • 10.1126/science.1118510
  • 10.1126/science.1221614
  • 10.1146/annurev.arplant.54.031902.134938
 Anderson NA, Bonawitz ND, Nyffeler K, Chapple C. Loss of FERULATE 5-HYDROXYLASE Leads to Mediator-Dependent Inhibition of Soluble Phenylpropanoid Biosynthesis in Arabidopsis. Plant Physiol. 2015 Nov;169(3):1557–67. PMID: 26048881; PMCID: PMC4634044.; Weng JK, Li Y, Mo H, Chapple C. Assembly of an evolutionarily new pathway for a-pyrone biosynthesis in Arabidopsis. Science. 2012 Aug 24;337(6097):960–4. doi: 10.1126/science.1221614. PMID: 22923580.; Kliebenstein DJ, Osbourn A. Making new molecules – evolution of pathways for novel metabolites in plants. Current Opinion in Plant Biology. 2012 Aug;15(4):415–23. doi: 10.1016/j.pbi.2012.05.005.; Gandía-Herrero F, García-Carmona F. Characterization of recombinant Beta vulgaris 4,5-DOPA-extradiol-dioxygenase active in the biosynthesis of betalains. Planta. 2012 Jul;236(1):91–100. doi: 10.1007/s00425-012-1593-2. PMID: 22270561.; Weng JK, Chapple C. The origin and evolution of lignin biosynthesis. New Phytol. 2010 Jul;187(2):273–85. doi: 10.1111/j.1469-8137.2010.03327.x. PMID: 20642725.; Vogt T. Phenylpropanoid biosynthesis. Mol Plant. 2010 Jan;3(1):2–20. doi: 10.1093/mp/ssp106. PMID: 20035037.; Pichersky E, Noel JP, Dudareva N. Biosynthesis of Plant Volatiles: Nature's Diversity and Ingenuity. Science. 2006 Feb 10;311(5762):808–11. doi: 10.1126/science.1118510.; Wink M. Evolution of secondary metabolites from an ecological and molecular phylogenetic perspective. Phytochemistry. 2003 Sep;64(1):3–19. doi: 10.1016/s0031-9422(03)00300-5. PMID: 12946402.; Boerjan W, Ralph J, Baucher M. Lignin biosynthesis. Annu Rev Plant Biol. 2003;54():519–46. doi: 10.1146/annurev.arplant.54.031902.134938. PMID: 14503002.; Humphreys JM, Chapple C. Rewriting the lignin roadmap. Curr Opin Plant Biol. 2002 Jun;5(3):224–9. doi: 10.1016/s1369-5266(02)00257-1. PMID: 11960740.; Meyer K, Shirley AM, Cusumano JC, Bell-Lelong DA, Chapple C. Lignin monomer composition is determined by the expression of a cytochrome P450-dependent monooxygenase in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 1998 Jun 09;95(12):6619–23. doi: 10.1073/pnas.95.12.6619.
monolignol biosynthesis

Accession ID: PlantCyc:SVIRIDIS_PWY-361		 -
monolignol biosynthesis

Accession ID: PlantCyc:AHYPOCHONDRIACUS_PWY-361		 -
monolignol biosynthesis

Accession ID: PlantCyc:ASPARAGUS_PWY-361		 -
monolignol biosynthesis

Accession ID: PlantCyc:WHEATA_PWY-361		 -
monolignol biosynthesis

Accession ID: PlantCyc:BANANA_PWY-361		 -
monolignol biosynthesis

Accession ID: PlantCyc:BARLEY_PWY-361		 -
monolignol biosynthesis

Accession ID: PlantCyc:BREADWHEAT_PWY-361
  • 10.1111/j.1432-1033.1975.tb02418.x
 Wyrambik D, Grisebach H. Purification and properties of isoenzymes of cinnamyl-alcohol dehydrogenase from soybean-cell-suspension cultures. Eur J Biochem. 1975 Nov 01;59(1):9–15. doi: 10.1111/j.1432-1033.1975.tb02418.x. PMID: 1250.
monolignol biosynthesis

Accession ID: PlantCyc:CARNATION_PWY-361		 -
monolignol biosynthesis

Accession ID: PlantCyc:CASSAVA_PWY-361		 -
monolignol biosynthesis

Accession ID: PlantCyc:CCAPSULARIS_PWY-361		 -
monolignol biosynthesis

Accession ID: PlantCyc:RUBBERTREE_PWY-361		 -
monolignol biosynthesis

Accession ID: PlantCyc:COCOA_PWY-361		 -
monolignol biosynthesis

Accession ID: PlantCyc:COMMONBEAN_PWY-361		 -
monolignol biosynthesis

Accession ID: PlantCyc:CROSEUS_PWY-361		 -
monolignol biosynthesis

Accession ID: PlantCyc:OMERIDIONALIS_PWY-361		 -
monolignol biosynthesis

Accession ID: PlantCyc:ONIVARA_PWY-361		 -
monolignol biosynthesis

Accession ID: PlantCyc:CORKOAK_PWY-361		 -