spermidine biosynthesis I

Li Y, Hess S, Pannell LK, Tabor CW, Tabor H. In vivo mechanism-based inactivation of S -adenosylmethionine decarboxylases from Escherichia coli , Salmonella typhimurium , and Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. U.S.A. 2001 Aug 28;98(19):10578–83. doi: 10.1073/pnas.181341198.; Hamasaki-Katagiri N, Tabor CW, Tabor H. Spermidine biosynthesis in Saccharomyces cerevisae: polyamine requirement of a null mutant of the SPE3 gene (spermidine synthase). Gene. 1997 Mar 10;187(1):35–43. doi: 10.1016/s0378-1119(96)00660-9. PMID: 9073064.

Metabolites

5'-Methylthioadenosine

Formula: C11H15N5O3S (297.089556)

CAS ID: 2457-80-9

Calcium cation

Formula: Ca (39.962591)

CAS ID: 14127-61-8

CO2

Formula: CO2 (43.98983)

CAS ID: 124-38-9

Cobalt ion

Formula: Co (58.933198)

CAS ID: 22541-53-3

Fe2+

Formula: Fe (55.934939)

CAS ID: 15438-31-0

Fe3+

Formula: Fe (55.934939)

CAS ID: 7439-89-6

H+

Formula: H (1.0078246)

CAS ID: 12408-02-5

Lithium

Formula: Li (7.016005)

CAS ID: 7439-93-2

Magnesium cation

Formula: Mg (23.98505)

CAS ID: 22537-22-0

Manganese(2+)

Formula: Mn (54.938046)

CAS ID: 7439-96-5

N-Ethylmaleimide

Formula: C6H7NO2 (125.0476762)

CAS ID: 128-53-0

Phenylhydrazine

Formula: C6H8N2 (108.06874479999999)

CAS ID: 100-63-0

Semicarbazide

Formula: CH5N3O (75.04326)

CAS ID: 57-56-7

Zinc cation

Formula: Zn (63.929145)

CAS ID: 23713-49-7

pyruvate

Formula: C3H3O3 (87.00821880000001)

CAS ID: 57-60-3

borohydride

Formula: BH4 (15.040603399999998)

CAS ID: 16971-29-2

Brocresine

Formula: C7H8BrNO2 (216.97383680000002)

CAS ID: 555-65-7



Enzyme

EC Number name full name note
2.5.1.-
2.5.1.16 spermidine synthase S-adenosyl 3-(methylthio)propylamine:putrescine 3-aminopropyltransferase
2.5.1.22 spermine synthase S-adenosyl 3-(methylthio)propylamine:spermidine 3-aminopropyltransferase
2.5.1.79 thermospermine synthase S-adenosyl 3-(methylthio)propylamine:spermidine 3-aminopropyltransferase (thermospermine synthesizing)
4.1.1.50 adenosylmethionine decarboxylase S-adenosyl-L-methionine carboxy-lyase [(5-deoxy-5-adenosyl)(3-aminopropyl)methylsulfonium-salt-forming]


Proteins

Protein ID name full name
O34426 speH S-adenosylmethionine decarboxylase proenzyme
P09158 speE Polyamine aminopropyltransferase
P0A7F6 speD S-adenosylmethionine decarboxylase proenzyme
P21182 SPE2 S-adenosylmethionine decarboxylase proenzyme
Q12074 SPE3 Spermidine synthase SPE3