RNA Polymerase II Transcription

Bernecky C, Herzog F, Baumeister W, Plitzko JM, Cramer P. Structure of transcribing mammalian RNA polymerase II. Nature. 2016 Jan 28;529(7587):551–4. doi: 10.1038/nature16482. PMID: 26789250.; Cramer P. Structure and function of RNA polymerase II. Adv Protein Chem. 2004;67():1–42. doi: 10.1016/s0065-3233(04)67001-x. PMID: 14969722.

Metabolites

1,2-Naphthoquinone

Formula: C10H6O2 (158.0367776)

CAS ID: 524-42-5

CO

Formula: CO (27.994915)

CAS ID: 630-08-0

H+

Formula: H (1.0078246)

CAS ID: 12408-02-5

H2O

Formula: H2O (18.0105642)

CAS ID: 7732-18-5

Hydrogen peroxide

Formula: H2O2 (34.0054792)

CAS ID: 7722-84-1

Nicotinamide

Formula: C6H6N2O (122.0480106)

CAS ID: 98-92-0

Oxygen

Formula: O2 (31.98983)

CAS ID: 7782-44-7

Retinoate

Formula: C20H28O2 (300.2089188)

CAS ID: 302-79-4

Zinc cation

Formula: Zn (63.929145)

CAS ID: 23713-49-7

acetate

Formula: C2H3O2 (59.0133038)

CAS ID: 71-50-1

adenosine 5'-monophosphate(2-)

Formula: C10H12N5O7P (345.0474332)

CAS ID:

NADPH(4-)

Formula: C21H26N7O17P3 (741.0598016)

CAS ID: 53-57-6

ATP(4-)

Formula: C10H12N5O13P3 (502.9644492)

CAS ID:

GTP(4-)

Formula: C10H12N5O14P3 (518.9593642)

CAS ID: 86527-72-2

2''-O-acetyl-ADP-D-ribose(2-)

Formula: C17H23N5O15P2 (599.0665868000001)

CAS ID:

NAD(1-)

Formula: C21H26N7O14P2 (662.1012936000001)

CAS ID: 53-84-9

ADP(3-)

Formula: C10H12N5O10P2 (424.0059412)

CAS ID:

6-O-phosphonato-D-glucono-1,5-lactone(2-)

Formula: C6H9O9P (255.99841940000002)

CAS ID:

NADP(3-)

Formula: C21H25N7O17P3 (740.051977)

CAS ID: 53-59-8



Enzyme

EC Number name full name note
2.3.2.27 RING-type E3 ubiquitin transferase [E2 ubiquitin-conjugating enzyme]-S-ubiquitinyl-L-cysteine:[acceptor protein] ubiquitin transferase (isopeptide bond-forming; RING-type)
2.7.11.1 non-specific serine/threonine protein kinase ATP:protein phosphotransferase (non-specific)


Proteins

Protein ID name full name