cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion)

Moore SJ, Biedendieck R, Lawrence AD, Deery E, Howard MJ, Rigby SEJ, Warren MJ. Characterization of the Enzyme CbiH60 Involved in Anaerobic Ring Contraction of the Cobalamin (Vitamin B12) Biosynthetic Pathway. Journal of Biological Chemistry. 2013 Jan;288(1):297–305. doi: 10.1074/jbc.m112.422535.; Roessner CA, Scott AI. Fine-Tuning Our Knowledge of the Anaerobic Route to Cobalamin (Vitamin B 12 ). J Bacteriol. 2006 Nov;188(21):7331–4. doi: 10.1128/jb.00918-06.; Schubert HL, Wilson KS, Raux E, Woodcock SC, Warren MJ. The X-ray structure of a cobalamin biosynthetic enzyme, cobalt-precorrin-4 methyltransferase. Nature Structural & Molecular Biology. 1998 Jul;5(7):585–92. doi: 10.1038/846.

Metabolites

Acetaldehyde

Formula: C2H4O (44.0262134)

CAS ID: 75-07-0

CO2

Formula: CO2 (43.98983)

CAS ID: 124-38-9

Cobalt ion

Formula: Co (58.933198)

CAS ID: 22541-53-3

H+

Formula: H (1.0078246)

CAS ID: 12408-02-5

H2O

Formula: H2O (18.0105642)

CAS ID: 7732-18-5

ATP(4-)

Formula: C10H12N5O13P3 (502.9644492)

CAS ID:

NAD(1-)

Formula: C21H26N7O14P2 (662.1012936000001)

CAS ID: 53-84-9

ADP(3-)

Formula: C10H12N5O10P2 (424.0059412)

CAS ID:



Enzyme

EC Number name full name note
2.1.1.-
1.3.1.106 cobalt-precorrin-6A reductase cobalt-precorrin-6B:NAD+ oxidoreductase
1.3.1.76 precorrin-2 dehydrogenase precorrin-2:NAD+ oxidoreductase
2.1.1.107 uroporphyrinogen-III C-methyltransferase S-adenosyl-L-methionine:uroporphyrinogen-III C-methyltransferase
2.1.1.151 cobalt-factor II C20-methyltransferase S-adenosyl-L-methionine:cobalt-factor-II C20-methyltransferase
2.1.1.195 cobalt-precorrin-5B (C1)-methyltransferase S-adenosyl-L-methionine:cobalt-precorrin-5B (C1)-methyltransferase
2.1.1.196 cobalt-precorrin-6B (C15)-methyltransferase [decarboxylating] S-adenosyl-L-methionine:precorrin-6B C15-methyltransferase (C-12-decarboxylating)
2.1.1.271 cobalt-precorrin-4 methyltransferase S-adenosyl-L-methionine:cobalt-precorrin-4 11-methyltransferase
2.1.1.272 cobalt-factor III methyltransferase S-adenosyl-L-methionine:cobalt-factor III 17-methyltransferase (ring contracting)
2.1.1.289 cobalt-precorrin-7 (C5)-methyltransferase S-adenosyl-L-methionine:precorrin-7 C5-methyltransferase
3.7.1.12 cobalt-precorrin 5A hydrolase cobalt-precorrin 5A acylhydrolase
4.99.1.3 sirohydrochlorin cobaltochelatase cobalt-sirohydrochlorin cobalt-lyase (sirohydrochlorin-forming)
4.99.1.4 sirohydrochlorin ferrochelatase siroheme ferro-lyase (sirohydrochlorin-forming)
5.4.99.60 cobalt-precorrin-8 methylmutase precorrin-8 11,12-methylmutase
6.3.5.11 cobyrinate a,c-diamide synthase cobyrinate:L-glutamine amido-ligase (ADP-forming)


Proteins

Protein ID name full name
O87689 cbiH60 Cobalt-factor III methyltransferase
O87690 cbiX Sirohydrochlorin cobaltochelatase
O87691 cbiJ Cobalt-precorrin-6A reductase
O87692 cbiC Cobalt-precorrin-8 methylmutase
P0A2G9 cbiF Cobalt-precorrin-4 C(11)-methyltransferase
P0A2H1 cbiE Cobalt-precorrin-7 C(5)-methyltransferase
P25924 cysG Siroheme synthase
P29946 cbiA Cobyrinate a,c-diamide synthase
P61818 sirC Precorrin-2 dehydrogenase
Q05590 cbiH Probable cobalt-factor III C(17)-methyltransferase
Q05591 cbiJ Cobalt-precorrin-6A reductase
Q05592 cbiK Sirohydrochlorin cobaltochelatase
Q05593 cbiL Cobalt-precorrin-2 C(20)-methyltransferase
Q05601 cbiC Cobalt-precorrin-8 methylmutase
Q05628 cbiD Cobalt-precorrin-5B C(1)-methyltransferase
Q05631 cbiG Cobalt-precorrin-5A hydrolase
Q05632 cbiT Cobalt-precorrin-6B C(15)-methyltransferase (decarboxylating)