superpathway of purine nucleotides de novo biosynthesis I

Zrenner R, Stitt M, Sonnewald U, Boldt R. Pyrimidine and purine biosynthesis and degradation in plants. Annu Rev Plant Biol. 2006;57():805–36. doi: 10.1146/annurev.arplant.57.032905.105421. PMID: 16669783.; He B, Smith JM, Zalkin H. Escherichia coli purB gene: cloning, nucleotide sequence, and regulation by purR. J Bacteriol. 1992 Jan;174(1):130–6. doi: 10.1128/jb.174.1.130-136.1992.

Metabolites

Calcium cation

Formula: Ca (39.962591)

CAS ID: 14127-61-8

Cl-

Formula: Cl (34.968853)

CAS ID: 16887-00-6

CO2

Formula: CO2 (43.98983)

CAS ID: 124-38-9

Cobalt ion

Formula: Co (58.933198)

CAS ID: 22541-53-3

Diphosphate

Formula: H4P2O7 (177.9432294)

CAS ID: 2466-09-3

Fe2+

Formula: Fe (55.934939)

CAS ID: 15438-31-0

H+

Formula: H (1.0078246)

CAS ID: 12408-02-5

H2O

Formula: H2O (18.0105642)

CAS ID: 7732-18-5

Hydroxylamine

Formula: NH3O (33.0214628)

CAS ID: 7803-49-8

Magnesium cation

Formula: Mg (23.98505)

CAS ID: 22537-22-0

Manganese(2+)

Formula: Mn (54.938046)

CAS ID: 7439-96-5

Potassium cation

Formula: K (38.963708)

CAS ID: 24203-36-9

Zinc cation

Formula: Zn (63.929145)

CAS ID: 23713-49-7

butenedioate

Formula: C4H2O4 (113.99530920000001)

CAS ID: 17013-01-3

ATP(4-)

Formula: C10H12N5O13P3 (502.9644492)

CAS ID:

NAD(1-)

Formula: C21H26N7O14P2 (662.1012936000001)

CAS ID: 53-84-9

ADP(3-)

Formula: C10H12N5O10P2 (424.0059412)

CAS ID:



Enzyme

EC Number name full name note
1.1.1.205 IMP dehydrogenase IMP:NAD+ oxidoreductase
1.17.4.1 ribonucleoside-diphosphate reductase 2'-deoxyribonucleoside-5'-diphosphate:thioredoxin-disulfide 2'-oxidoreductase
2.1.2.2 phosphoribosylglycinamide formyltransferase 1 10-formyltetrahydrofolate:5'-phosphoribosylglycinamide N-formyltransferase
2.1.2.3 phosphoribosylaminoimidazolecarboxamide formyltransferase 10-formyltetrahydrofolate:5'-phosphoribosyl-5-amino-4-imidazole-carboxamide N-formyltransferase
2.4.2.14 amidophosphoribosyltransferase 5-phospho-beta-D-ribosylamine:diphosphate phospho-alpha-D-ribosyltransferase (glutamate-amidating)
2.7.13.3 histidine kinase ATP:protein-L-histidine N-phosphotransferase
2.7.4.3 adenylate kinase ATP:AMP phosphotransferase
2.7.4.6 nucleoside-diphosphate kinase ATP:nucleoside-diphosphate phosphotransferase
2.7.4.8 guanylate kinase ATP:(d)GMP phosphotransferase
3.5.4.10 IMP cyclohydrolase IMP 1,2-hydrolase (decyclizing)
4.1.1.21 phosphoribosylaminoimidazole carboxylase 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate carboxy-lyase [5-amino-1-(5-phospho-D-ribosyl)imidazole-forming]
4.3.2.2 adenylosuccinate lyase N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming)
6.3.2.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate:L-aspartate ligase (ADP-forming)
6.3.3.1 phosphoribosylformylglycinamidine cyclo-ligase 2-(Formamido)-N1-(5-phosphoribosyl)acetamidine cyclo-ligase (ADP-forming)
6.3.4.13 phosphoribosylamine-glycine ligase 5-phospho-D-ribosylamine:glycine ligase (ADP-forming)
6.3.4.4 adenylosuccinate synthase IMP:L-aspartate ligase (GDP-forming)
6.3.5.2 GMP synthase (glutamine-hydrolysing) xanthosine-5'-phosphate:L-glutamine amido-ligase (AMP-forming)
6.3.5.3 phosphoribosylformylglycinamidine synthase N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide:L-glutamine amido-ligase (ADP-forming)


Proteins

Protein ID name full name
P04046 ADE4 Amidophosphoribosyltransferase
P04161 ADE8 Phosphoribosylglycinamide formyltransferase
P07170 ADK1 Adenylate kinase
P07244 ADE57 Bifunctional purine biosynthetic protein ADE5,7
P09938 RNR2 Ribonucleoside-diphosphate reductase small chain 1
P15454 GUK1 Guanylate kinase
P21264 ADE2 Phosphoribosylaminoimidazole carboxylase
P21524 RNR1 Ribonucleoside-diphosphate reductase large chain 1
P27616 ADE1 Phosphoribosylaminoimidazole-succinocarboxamide synthase
P36010 YNK1 Nucleoside diphosphate kinase
P38009 ADE17 Bifunctional purine biosynthesis protein ADE17
P38625 GUA1 GMP synthase [glutamine-hydrolyzing]
P38972 ADE6 Phosphoribosylformylglycinamidine synthase
P49723 RNR4 Ribonucleoside-diphosphate reductase small chain 2
P54113 ADE16 Bifunctional purine biosynthesis protein ADE16
P80210 ADE12 Adenylosuccinate synthetase
Q05911 ADE13 Adenylosuccinate lyase