Metabolite Card

Formula: C9H12N2O6 (244.0695)
SMILES: OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N1C=CC(=O)NC1=O

Synonyms [en]

uridine; Uridin; beta-Uridine; 1-beta-D-Ribofuranosyluracil; 1-beta-D-ribofuranosylpyrimidine-2,4(1H,3H)-dione; b-Uridine

Reviewed

Last reviewed on 2024-06-28.

Cite this Page

Uridine. 数据之源,洞见之始. SMRUCC genomics institute, a synthetic life researcher from China. https://biocad_registry.innovation.ac.cn/s/(-)-arctiin (retrieved 2026-01-03) (CAD Registry RN: BioCAD00000019208). Licensed under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).

Note

Uridine, also known as beta-uridine or 1-beta-D-ribofuranosylpyrimidine-2,4(1H,3H)-dione, is a member of the class of compounds known as pyrimidine nucleosides. Pyrimidine nucleosides are compounds comprising a pyrimidine base attached to a ribosyl or deoxyribosyl moiety. More specifically, uridine is a nucleoside consisting of uracil and D-ribose and a component of RNA. Uridine is soluble (in water) and a very weakly acidic compound (based on its pKa). Uridine can be synthesized from uracil. It is one of the five standard nucleosides which make up nucleic acids, the others being adenosine, thymidine, cytidine and guanosine. The five nucleosides are commonly abbreviated to their one-letter codes U, A, T, C and G respectively. Uridine is also a parent compound for other transformation products, including but not limited to, nikkomycin Z, 3'-(enolpyruvyl)uridine 5'-monophosphate, and 5-aminomethyl-2-thiouridine. Uridine can be found in most biofluids, including urine, breast milk, cerebrospinal fluid (CSF), and blood. Within the cell, uridine is primarily located in the mitochondria, in the nucleus and the lysosome. It can also be found in the extracellular space. As an essential nucleoside, uridine exists in all living species, ranging from bacteria to humans. In humans, uridine is involved in several metabolic disorders, some of which include dhydropyrimidinase deficiency, MNGIE (mitochondrial neurogastrointestinal encephalopathy), and beta-ureidopropionase deficiency. Moreover, uridine is found to be associated with Lesch-Nyhan syndrome, which is an inborn error of metabolism. Uridine is a nucleoside consisting of uracil and D-ribose and a component of RNA. Uridine plays a role in the glycolysis pathway of galactose. In humans there is no catabolic process to metabolize galactose. Therefore, galactose is converted to glucose and metabolized via the normal glucose metabolism pathways. More specifically, consumed galactose is converted into galactose 1-phosphate (Gal-1-P). This molecule is a substrate for the enzyme galactose-1-phosphate uridyl transferase which transfers a UDP molecule to the galactose molecule. The end result is UDP-galactose and glucose-1-phosphate. This process is continued to allow the proper glycolysis of galactose. Uridine is found in many foods (anything containing RNA) but is destroyed in the liver and gastrointestinal tract, and so no food, when consumed, has ever been reliably shown to elevate blood uridine levels. On the other hand, consumption of RNA-rich foods may lead to high levels of purines (adenine and guanosine) in blood. High levels of purines are known to increase uric acid production and may aggravate or lead to conditions such as gout.

Entity Information

DBLinks

Other DBLinks
  • CAS Registry Number: 16535-78-7
  • CAS Registry Number: 3083-77-0
  • CAS Registry Number: 58-96-8
  • CAS Registry Number: 69-75-0
  • CAS Registry Number: 92487-68-8
  • PubChem: 1177
  • PubChem: 3593
  • PubChem: 6029
  • ChEBI: ChEBI:16704
  • ChEBI: ChEBI:210497
  • HMDB: HMDB0000296
  • HMDB: HMDB00296
  • KEGG: C00299
  • BioCyc: URIDINE
  • NCBI MeSH: Uridine
  • Wikipedia: Uridine
  • DrugBank: DB02745
  • RefMet: RM0135933
  • MoNA: BAF_UVA_POS000684
  • MoNA: BAF_UVA_POS001171
  • MoNA: BAF_UVA_POS001172
  • MoNA: BAF_UVA_POS001173
  • MoNA: BML82300
  • MoNA: BML82301
  • MoNA: CCMSLIB00000479752
  • MoNA: CCMSLIB00000577899
  • MoNA: CCMSLIB00000578126
  • MoNA: CCMSLIB00005464331
  • MoNA: CCMSLIB00005464337
  • MoNA: EMBL-MCF_spec24636
  • MoNA: EMBL_MCF_2_0_HRMS_Library000501
  • MoNA: EMBL_MCF_2_0_HRMS_Library000502
  • MoNA: FiehnHILIC000839
  • MoNA: FiehnHILIC001564
  • MoNA: FiehnHILIC002403
  • MoNA: FiehnHILIC003041
  • MoNA: FiehnLib000979
  • MoNA: FiehnLib000980
  • MoNA: HMDB0000296_c_ms_1976
  • MoNA: HMDB0000296_c_ms_1985
  • MoNA: HMDB0000296_ms_ms_504
  • MoNA: HMDB0000296_ms_ms_505
  • MoNA: HMDB0000296_ms_ms_506
  • MoNA: KNA00113
  • MoNA: KNA00114
  • MoNA: KNA00115
  • MoNA: KNA00116
  • MoNA: KNA00280
  • MoNA: KNA00281
  • MoNA: KNA00282
  • MoNA: KNA00283
  • MoNA: KNA00515
  • MoNA: KNA00516
  • MoNA: KNA00517
  • MoNA: KNA00518
  • MoNA: KNA00676
  • MoNA: KNA00677
  • MoNA: KNA00678
  • MoNA: KNA00679
  • MoNA: KO004246
  • MoNA: KO004247
  • MoNA: KO004248
  • MoNA: KO004249
  • MoNA: KO004250
  • MoNA: KO009307
  • MoNA: KO009308
  • MoNA: KZ000273
  • MoNA: ML005751
  • MoNA: MoNA002232
  • MoNA: MoNA002233
  • MoNA: MoNA002234
  • MoNA: MoNA010250
  • MoNA: MoNA010251
  • MoNA: MoNA010252
  • MoNA: MoNA010253
  • MoNA: MoNA010254
  • MoNA: MoNA010255
  • MoNA: MoNA016928
  • MoNA: MoNA024328
  • MoNA: MoNA024348
  • MoNA: MoNA032526
  • MoNA: MoNA032528
  • MoNA: MoNA032530
  • MoNA: MoNA034638
  • MoNA: MoNA034639
  • MoNA: MoNA034640
  • MoNA: MoNA034868
  • MoNA: MoNA034870
  • MoNA: MoNA034871
  • MoNA: MoNA037338
  • MoNA: MoNA038087
  • MoNA: MoNA_0006586
  • MoNA: MoNA_0006587
  • MoNA: MoNA_0006588
  • MoNA: MoNA_0006589
  • MoNA: MoNA_0006590
  • MoNA: MoNA_0006591
  • MoNA: MoNA_0006778
  • MoNA: MoNA_0006779
  • MoNA: MoNA_0006780
  • MoNA: MoNA_0006781
  • MoNA: MoNA_0006782
  • MoNA: MoNA_0006783
  • MoNA: MoNA_0007758
  • MoNA: MoNA_0007759
  • MoNA: MoNA_0007760
  • MoNA: MoNA_0007761
  • MoNA: MoNA_0007762
  • MoNA: MoNA_0007763
  • MoNA: MoNA_0008037
  • MoNA: MoNA_0008038
  • MoNA: MoNA_0008339
  • MoNA: MoNA_0008340
  • MoNA: MoNA_0008341
  • MoNA: MoNA_0008342
  • MoNA: MoNA_0008501
  • MoNA: MoNA_0008502
  • MoNA: MoNA_0008503
  • MoNA: MoNA_0008504
  • MoNA: MoNA_0008505
  • MoNA: MoNA_0008506
  • MoNA: MoNA_0008507
  • MoNA: MT000120
  • MoNA: OUF00486
  • MoNA: OUF00487
  • MoNA: PR010029
  • MoNA: PR100615
  • MoNA: PS036501
  • MoNA: PS036502
  • MoNA: PS036503
  • MoNA: PS036504
  • MoNA: PT203650
  • MoNA: RP031401
  • MoNA: RP031402
  • MoNA: RP031403
  • MoNA: RP031411
  • MoNA: RP031412
  • MoNA: RP031413
  • Metlin: METLIN_90
  • Coconut NaturalProduct: CNP0154061.0
  • Coconut NaturalProduct: CNP0230441.2
  • Coconut NaturalProduct: CNP0230441.4
  • Coconut NaturalProduct: CNP0230441.6
  • Coconut NaturalProduct: CNP0230441.7

Class / Ontology

Metabolic Network
ID EC Number Name
KEGG:R00963 3.1.3.5 uridine 5'-monophosphate phosphohydrolase
KEGG:R00964 2.7.1.48 ATP:uridine 5'-phosphotransferase
KEGG:R00968 2.7.1.48 GTP:uridine 5'-phosphotransferase
KEGG:R01080 3.2.2.3 uridine ribohydrolase
KEGG:R01876 2.4.2.2 uridine:phosphate alpha-D-ribosyltransferase
KEGG:R01877 3.1.3.6 uridine 3'-monophosphate phosphohydrolase
KEGG:R01878 3.5.4.5 cytidine aminohydrolase
KEGG:R01879 1.14.11.3 2-deoxyuridine,2-oxoglutarate:oxygen oxidoreductase (2'-hydroxylating)
BioCyc:RXN-14025 3.1.3.5 UMP + WATER --> URIDINE + Pi
BioCyc:URIDINEKIN-RXN 2.7.1.48 URIDINE + ATP --> PROTON + UMP + ADP
BioCyc:CYTIDEAM2-RXN 3.5.4.5 PROTON + WATER + CYTIDINE --> URIDINE + AMMONIUM
BioCyc:URKI-RXN 2.7.1.48 GTP:uridine 5'-phosphotransferase
BioCyc:RXN-14115 3.1.3.6 CPD-3724 + WATER --> URIDINE + Pi
BioCyc:URPHOS-RXN 2.4.2.2 Pi + URIDINE<=>RIBOSE-1P + URACIL
BioCyc:RXN-14510 3.1.3.- CPD-3723 + WATER --> URIDINE + Pi
BioCyc:TRANS-RXN-108I uridine:proton symport
BioCyc:URIDINE-NUCLEOSIDASE-RXN 3.2.2.3 URIDINE + WATER --> D-Ribofuranose + URACIL
Rhea:RHEA:15578 3.2.2.3 uridine + H2O => D-ribose + uracil
Rhea:RHEA:15579 3.2.2.3 D-ribose + uracil => uridine + H2O
Rhea:RHEA:15580 3.2.2.3 uridine + H2O <=> D-ribose + uracil
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Organism Source

Taxonomy Source

  1. Alangium kurzii [ncbi taxid: 161874]
  2. Anethum graveolens [ncbi taxid: 40922]
  3. Angelica sinensis [ncbi taxid: 165353]
  4. Astragalus membranaceus [ncbi taxid: 649199]
  5. Atractylodes lancea [ncbi taxid: 41486]
  6. Glehnia littoralis [ncbi taxid: 48119]
  7. Nigrospora sphaerica [ncbi taxid: 114231]
  8. Ophiopogon japonicus [ncbi taxid: 100506]
  9. Rehmannia glutinosa [ncbi taxid: 99300]
  10. Trifolium glanduliferum [ncbi taxid: 361918]
  11. Alangium kurzii [ncbi taxid: 161874]
  12. Anethum graveolens [ncbi taxid: 40922]
  13. Angelica sinensis [ncbi taxid: 165353]
  14. Aspergillus insuetus [ncbi taxid: 469274]
  15. Astragalus membranaceus [ncbi taxid: 649199]
  16. Atractylodes lancea [ncbi taxid: 41486]
  17. Cistanche tubulosa [ncbi taxid: 161397]
  18. Cordyceps militaris cv. [ncbi taxid: ]
  19. Cordyceps sinensis [ncbi taxid: ]
  20. Curcuma domestica [ncbi taxid: ]
  21. Escherichia coli [ncbi taxid: 562]
  22. FOOD SAKE [ncbi taxid: ]
  23. Fritillaria cirrhosa [ncbi taxid: 108544]
  24. Gastrodia elata [ncbi taxid: 91201]
  25. Glehnia littoralis [ncbi taxid: 48119]
  26. Ophiopogon japonicus [ncbi taxid: 100506]
  27. Panax ginseng [ncbi taxid: 4054]
  28. Perovskia scrophularifolia [ncbi taxid: ]
  29. Phellinus igniarius [ncbi taxid: 40472]
  30. Phomopsis sp. PSU-D15 [ncbi taxid: ]
  31. Rehmannia glutinosa [ncbi taxid: 99300]
  32. Sebertia acuminata [ncbi taxid: ]
  33. Spiraea formosana [ncbi taxid: 409510]
  34. Tylopilus plumbeoviolaceus [ncbi taxid: 182793]

Pathway Synthetic

pathway id name
BioCyc:HUMAN_PWY-7193 pyrimidine ribonucleosides salvage I
BioCyc:ECO_PWY-7193 pyrimidine ribonucleosides salvage I
BioCyc:YEAST_PWY0-163 salvage pathways of pyrimidine ribonucleotides
BioCyc:ARA_PWY-7196 superpathway of pyrimidine ribonucleosides salvage
BioCyc:ARA_PWY-7185 UTP and CTP dephosphorylation I
BioCyc:LEISH_PWY0-163 salvage pathways of pyrimidine ribonucleotides
BioCyc:TRYPANO_P1-PWY purine and pyrimidine metabolism
BioCyc:TRYPANO_PWY0-163 salvage pathways of pyrimidine ribonucleotides
BioCyc:SHIGELLA_PWY0-1295 pyrimidine ribonucleosides degradation
BioCyc:SHIGELLA_PWY-7193 pyrimidine ribonucleosides salvage I
BioCyc:PLASMO_P1-PWY purine and pyrimidine metabolism
BioCyc:ECOL199310_PWY-7193 pyrimidine ribonucleosides salvage I
BioCyc:MOUSE_PWY-6556 pyrimidine ribonucleosides degradation II
BioCyc:MOUSE_DRIBOPMET-PWY (deoxy)ribose phosphate degradation
BioCyc:SCO_P1-PWY salvage pathways of purine and pyrimidine nucleotides
BioCyc:SCO_DRIBOPMET-PWY (deoxy)ribose phosphate degradation
BioCyc:SCO_PWY0-163 salvage pathways of pyrimidine ribonucleotides
BioCyc:10403S_RAST_PWY0-163 salvage pathways of pyrimidine ribonucleotides
BioCyc:THAPS_PWY0-163 salvage pathways of pyrimidine ribonucleotides
BioCyc:CLOSSAC_PWY-7209 superpathway of pyrimidine ribonucleosides degradation
View All Pathways