Uridine (BioCAD00000019208)
blood breast milk cerebrospinal fluid (csf) feces urine placenta plant natural products microbial natural products
Metabolite Card
Formula: C9H12N2O6 (244.0695)
SMILES: OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N1C=CC(=O)NC1=O
Synonyms [en]
uridine; Uridin; beta-Uridine; 1-beta-D-Ribofuranosyluracil; 1-beta-D-ribofuranosylpyrimidine-2,4(1H,3H)-dione; b-Uridine
Last reviewed on 2024-06-28.
Cite this Page
Uridine. 数据之源,洞见之始. SMRUCC genomics institute, a synthetic life researcher from China.
https://biocad_registry.innovation.ac.cn/s/(-)-arctiin
(retrieved
2026-01-03) (CAD Registry RN: BioCAD00000019208). Licensed
under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).
Note
Uridine, also known as beta-uridine or 1-beta-D-ribofuranosylpyrimidine-2,4(1H,3H)-dione, is a member of the class of compounds known as pyrimidine nucleosides. Pyrimidine nucleosides are compounds comprising a pyrimidine base attached to a ribosyl or deoxyribosyl moiety. More specifically, uridine is a nucleoside consisting of uracil and D-ribose and a component of RNA. Uridine is soluble (in water) and a very weakly acidic compound (based on its pKa). Uridine can be synthesized from uracil. It is one of the five standard nucleosides which make up nucleic acids, the others being adenosine, thymidine, cytidine and guanosine. The five nucleosides are commonly abbreviated to their one-letter codes U, A, T, C and G respectively. Uridine is also a parent compound for other transformation products, including but not limited to, nikkomycin Z, 3'-(enolpyruvyl)uridine 5'-monophosphate, and 5-aminomethyl-2-thiouridine. Uridine can be found in most biofluids, including urine, breast milk, cerebrospinal fluid (CSF), and blood. Within the cell, uridine is primarily located in the mitochondria, in the nucleus and the lysosome. It can also be found in the extracellular space. As an essential nucleoside, uridine exists in all living species, ranging from bacteria to humans. In humans, uridine is involved in several metabolic disorders, some of which include dhydropyrimidinase deficiency, MNGIE (mitochondrial neurogastrointestinal encephalopathy), and beta-ureidopropionase deficiency. Moreover, uridine is found to be associated with Lesch-Nyhan syndrome, which is an inborn error of metabolism. Uridine is a nucleoside consisting of uracil and D-ribose and a component of RNA. Uridine plays a role in the glycolysis pathway of galactose. In humans there is no catabolic process to metabolize galactose. Therefore, galactose is converted to glucose and metabolized via the normal glucose metabolism pathways. More specifically, consumed galactose is converted into galactose 1-phosphate (Gal-1-P). This molecule is a substrate for the enzyme galactose-1-phosphate uridyl transferase which transfers a UDP molecule to the galactose molecule. The end result is UDP-galactose and glucose-1-phosphate. This process is continued to allow the proper glycolysis of galactose. Uridine is found in many foods (anything containing RNA) but is destroyed in the liver and gastrointestinal tract, and so no food, when consumed, has ever been reliably shown to elevate blood uridine levels. On the other hand, consumption of RNA-rich foods may lead to high levels of purines (adenine and guanosine) in blood. High levels of purines are known to increase uric acid production and may aggravate or lead to conditions such as gout.
DBLinks
- CAS Registry Number: 58-96-8
- PubChem CID: 6029
- ChEBI: 16704
- HMDB: HMDB0000296
- LipidMaps:
- KEGG: C00299
- BioCyc: URIDINE
- NCBI MeSH: Uridine
- Wikipedia: Uridine
Other DBLinks
- CAS Registry Number: 16535-78-7
- CAS Registry Number: 3083-77-0
- CAS Registry Number: 58-96-8
- CAS Registry Number: 69-75-0
- CAS Registry Number: 92487-68-8
- PubChem: 1177
- PubChem: 3593
- PubChem: 6029
- ChEBI: ChEBI:16704
- ChEBI: ChEBI:210497
- HMDB: HMDB0000296
- HMDB: HMDB00296
- KEGG: C00299
- BioCyc: URIDINE
- NCBI MeSH: Uridine
- Wikipedia: Uridine
- DrugBank: DB02745
- RefMet: RM0135933
- MoNA: BAF_UVA_POS000684
- MoNA: BAF_UVA_POS001171
- MoNA: BAF_UVA_POS001172
- MoNA: BAF_UVA_POS001173
- MoNA: BML82300
- MoNA: BML82301
- MoNA: CCMSLIB00000479752
- MoNA: CCMSLIB00000577899
- MoNA: CCMSLIB00000578126
- MoNA: CCMSLIB00005464331
- MoNA: CCMSLIB00005464337
- MoNA: EMBL-MCF_spec24636
- MoNA: EMBL_MCF_2_0_HRMS_Library000501
- MoNA: EMBL_MCF_2_0_HRMS_Library000502
- MoNA: FiehnHILIC000839
- MoNA: FiehnHILIC001564
- MoNA: FiehnHILIC002403
- MoNA: FiehnHILIC003041
- MoNA: FiehnLib000979
- MoNA: FiehnLib000980
- MoNA: HMDB0000296_c_ms_1976
- MoNA: HMDB0000296_c_ms_1985
- MoNA: HMDB0000296_ms_ms_504
- MoNA: HMDB0000296_ms_ms_505
- MoNA: HMDB0000296_ms_ms_506
- MoNA: KNA00113
- MoNA: KNA00114
- MoNA: KNA00115
- MoNA: KNA00116
- MoNA: KNA00280
- MoNA: KNA00281
- MoNA: KNA00282
- MoNA: KNA00283
- MoNA: KNA00515
- MoNA: KNA00516
- MoNA: KNA00517
- MoNA: KNA00518
- MoNA: KNA00676
- MoNA: KNA00677
- MoNA: KNA00678
- MoNA: KNA00679
- MoNA: KO004246
- MoNA: KO004247
- MoNA: KO004248
- MoNA: KO004249
- MoNA: KO004250
- MoNA: KO009307
- MoNA: KO009308
- MoNA: KZ000273
- MoNA: ML005751
- MoNA: MoNA002232
- MoNA: MoNA002233
- MoNA: MoNA002234
- MoNA: MoNA010250
- MoNA: MoNA010251
- MoNA: MoNA010252
- MoNA: MoNA010253
- MoNA: MoNA010254
- MoNA: MoNA010255
- MoNA: MoNA016928
- MoNA: MoNA024328
- MoNA: MoNA024348
- MoNA: MoNA032526
- MoNA: MoNA032528
- MoNA: MoNA032530
- MoNA: MoNA034638
- MoNA: MoNA034639
- MoNA: MoNA034640
- MoNA: MoNA034868
- MoNA: MoNA034870
- MoNA: MoNA034871
- MoNA: MoNA037338
- MoNA: MoNA038087
- MoNA: MoNA_0006586
- MoNA: MoNA_0006587
- MoNA: MoNA_0006588
- MoNA: MoNA_0006589
- MoNA: MoNA_0006590
- MoNA: MoNA_0006591
- MoNA: MoNA_0006778
- MoNA: MoNA_0006779
- MoNA: MoNA_0006780
- MoNA: MoNA_0006781
- MoNA: MoNA_0006782
- MoNA: MoNA_0006783
- MoNA: MoNA_0007758
- MoNA: MoNA_0007759
- MoNA: MoNA_0007760
- MoNA: MoNA_0007761
- MoNA: MoNA_0007762
- MoNA: MoNA_0007763
- MoNA: MoNA_0008037
- MoNA: MoNA_0008038
- MoNA: MoNA_0008339
- MoNA: MoNA_0008340
- MoNA: MoNA_0008341
- MoNA: MoNA_0008342
- MoNA: MoNA_0008501
- MoNA: MoNA_0008502
- MoNA: MoNA_0008503
- MoNA: MoNA_0008504
- MoNA: MoNA_0008505
- MoNA: MoNA_0008506
- MoNA: MoNA_0008507
- MoNA: MT000120
- MoNA: OUF00486
- MoNA: OUF00487
- MoNA: PR010029
- MoNA: PR100615
- MoNA: PS036501
- MoNA: PS036502
- MoNA: PS036503
- MoNA: PS036504
- MoNA: PT203650
- MoNA: RP031401
- MoNA: RP031402
- MoNA: RP031403
- MoNA: RP031411
- MoNA: RP031412
- MoNA: RP031413
- Metlin: METLIN_90
- Coconut NaturalProduct: CNP0154061.0
- Coconut NaturalProduct: CNP0230441.2
- Coconut NaturalProduct: CNP0230441.4
- Coconut NaturalProduct: CNP0230441.6
- Coconut NaturalProduct: CNP0230441.7
Class / Ontology
- WishartLab ClassyFire: [Pyrimidine nucleosides] Pyrimidine nucleosides
- RefMet: [Pyrimidine ribonucleosides] Pyrimidine ribonucleosides
- ChEBI: [CHEBI:16704] uridine
- Coconut NaturalProduct: [Pyrimidine nucleos(t)ides] Pyrimidine nucleos(t)ides
| ID | EC Number | Name |
|---|---|---|
| KEGG:R00963 | 3.1.3.5 | uridine 5'-monophosphate phosphohydrolase |
| KEGG:R00964 | 2.7.1.48 | ATP:uridine 5'-phosphotransferase |
| KEGG:R00968 | 2.7.1.48 | GTP:uridine 5'-phosphotransferase |
| KEGG:R01080 | 3.2.2.3 | uridine ribohydrolase |
| KEGG:R01876 | 2.4.2.2 | uridine:phosphate alpha-D-ribosyltransferase |
| KEGG:R01877 | 3.1.3.6 | uridine 3'-monophosphate phosphohydrolase |
| KEGG:R01878 | 3.5.4.5 | cytidine aminohydrolase |
| KEGG:R01879 | 1.14.11.3 | 2-deoxyuridine,2-oxoglutarate:oxygen oxidoreductase (2'-hydroxylating) |
| BioCyc:RXN-14025 | 3.1.3.5 | UMP + WATER --> URIDINE + Pi |
| BioCyc:URIDINEKIN-RXN | 2.7.1.48 | URIDINE + ATP --> PROTON + UMP + ADP |
| BioCyc:CYTIDEAM2-RXN | 3.5.4.5 | PROTON + WATER + CYTIDINE --> URIDINE + AMMONIUM |
| BioCyc:URKI-RXN | 2.7.1.48 | GTP:uridine 5'-phosphotransferase |
| BioCyc:RXN-14115 | 3.1.3.6 | CPD-3724 + WATER --> URIDINE + Pi |
| BioCyc:URPHOS-RXN | 2.4.2.2 | Pi + URIDINE<=>RIBOSE-1P + URACIL |
| BioCyc:RXN-14510 | 3.1.3.- | CPD-3723 + WATER --> URIDINE + Pi |
| BioCyc:TRANS-RXN-108I | uridine:proton symport | |
| BioCyc:URIDINE-NUCLEOSIDASE-RXN | 3.2.2.3 | URIDINE + WATER --> D-Ribofuranose + URACIL |
| Rhea:RHEA:15578 | 3.2.2.3 | uridine + H2O => D-ribose + uracil |
| Rhea:RHEA:15579 | 3.2.2.3 | D-ribose + uracil => uridine + H2O |
| Rhea:RHEA:15580 | 3.2.2.3 | uridine + H2O <=> D-ribose + uracil |
Taxonomy Source
- Alangium kurzii [ncbi taxid: 161874]
- Anethum graveolens [ncbi taxid: 40922]
- Angelica sinensis [ncbi taxid: 165353]
- Astragalus membranaceus [ncbi taxid: 649199]
- Atractylodes lancea [ncbi taxid: 41486]
- Glehnia littoralis [ncbi taxid: 48119]
- Nigrospora sphaerica [ncbi taxid: 114231]
- Ophiopogon japonicus [ncbi taxid: 100506]
- Rehmannia glutinosa [ncbi taxid: 99300]
- Trifolium glanduliferum [ncbi taxid: 361918]
- Alangium kurzii [ncbi taxid: 161874]
- Anethum graveolens [ncbi taxid: 40922]
- Angelica sinensis [ncbi taxid: 165353]
- Aspergillus insuetus [ncbi taxid: 469274]
- Astragalus membranaceus [ncbi taxid: 649199]
- Atractylodes lancea [ncbi taxid: 41486]
- Cistanche tubulosa [ncbi taxid: 161397]
- Cordyceps militaris cv. [ncbi taxid: ]
- Cordyceps sinensis [ncbi taxid: ]
- Curcuma domestica [ncbi taxid: ]
- Escherichia coli [ncbi taxid: 562]
- FOOD SAKE [ncbi taxid: ]
- Fritillaria cirrhosa [ncbi taxid: 108544]
- Gastrodia elata [ncbi taxid: 91201]
- Glehnia littoralis [ncbi taxid: 48119]
- Ophiopogon japonicus [ncbi taxid: 100506]
- Panax ginseng [ncbi taxid: 4054]
- Perovskia scrophularifolia [ncbi taxid: ]
- Phellinus igniarius [ncbi taxid: 40472]
- Phomopsis sp. PSU-D15 [ncbi taxid: ]
- Rehmannia glutinosa [ncbi taxid: 99300]
- Sebertia acuminata [ncbi taxid: ]
- Spiraea formosana [ncbi taxid: 409510]
- Tylopilus plumbeoviolaceus [ncbi taxid: 182793]
Pathway Synthetic
| pathway id | name |
|---|---|
| BioCyc:HUMAN_PWY-7193 | pyrimidine ribonucleosides salvage I |
| BioCyc:ECO_PWY-7193 | pyrimidine ribonucleosides salvage I |
| BioCyc:YEAST_PWY0-163 | salvage pathways of pyrimidine ribonucleotides |
| BioCyc:ARA_PWY-7196 | superpathway of pyrimidine ribonucleosides salvage |
| BioCyc:ARA_PWY-7185 | UTP and CTP dephosphorylation I |
| BioCyc:LEISH_PWY0-163 | salvage pathways of pyrimidine ribonucleotides |
| BioCyc:TRYPANO_P1-PWY | purine and pyrimidine metabolism |
| BioCyc:TRYPANO_PWY0-163 | salvage pathways of pyrimidine ribonucleotides |
| BioCyc:SHIGELLA_PWY0-1295 | pyrimidine ribonucleosides degradation |
| BioCyc:SHIGELLA_PWY-7193 | pyrimidine ribonucleosides salvage I |
| BioCyc:PLASMO_P1-PWY | purine and pyrimidine metabolism |
| BioCyc:ECOL199310_PWY-7193 | pyrimidine ribonucleosides salvage I |
| BioCyc:MOUSE_PWY-6556 | pyrimidine ribonucleosides degradation II |
| BioCyc:MOUSE_DRIBOPMET-PWY | (deoxy)ribose phosphate degradation |
| BioCyc:SCO_P1-PWY | salvage pathways of purine and pyrimidine nucleotides |
| BioCyc:SCO_DRIBOPMET-PWY | (deoxy)ribose phosphate degradation |
| BioCyc:SCO_PWY0-163 | salvage pathways of pyrimidine ribonucleotides |
| BioCyc:10403S_RAST_PWY0-163 | salvage pathways of pyrimidine ribonucleotides |
| BioCyc:THAPS_PWY0-163 | salvage pathways of pyrimidine ribonucleotides |
| BioCyc:CLOSSAC_PWY-7209 | superpathway of pyrimidine ribonucleosides degradation |