CDP (BioCAD00000008106)

blood

Metabolite Card

Formula: C9H15N3O11P2 (403.0182)
SMILES: NC1=NC(=O)N(C=C1)[C@@H]1O[C@H](COP(O)(=O)OP(O)(O)=O)[C@@H](O)[C@H]1O

Synonyms [en]

CDP; Cytidine 5'-diphosphate; Cytidine diphosphate; cytidine-5'-diphosphate; Cytidine 5'-pyrophosphate; 5'-CDP

Reviewed

Last reviewed on 2024-06-28.

Cite this Page

CDP. 数据之源，洞见之始. SMRUCC genomics institute, a synthetic life researcher from China. https://biocad_registry.innovation.ac.cn/s/(-)-arctiin (retrieved 2026-01-03) (CAD Registry RN: BioCAD00000008106). Licensed under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).

Note

Cytidine diphosphate, abbreviated CDP, and also known as 5'-CDP, belongs to the class of organic compounds known as pyrimidine ribonucleoside diphosphates. These are pyrimidine ribonucleotides with diphosphate group linked to the ribose moiety. It is a cytosine nucleotide containing two phosphate groups esterified to the sugar moiety. CDP exists in all living species, ranging from bacteria to humans. In humans, CDP is involved in cardiolipin biosynthesis. Outside of the human body, CDP has been detected, but not quantified in several different foods, such as carobs, mexican oregano, evergreen huckleberries, green vegetables, and pepper (Capsicum baccatum).

Mitochondria Nucleus
Entity Information

DBLinks

Other DBLinks
  • CAS Registry Number: 102601-46-7
  • CAS Registry Number: 34393-59-4
  • CAS Registry Number: 54394-90-0
  • CAS Registry Number: 63-38-7
  • PubChem: 3412
  • PubChem: 6132
  • ChEBI: ChEBI:17239
  • HMDB: HMDB0001546
  • KEGG: C00112
  • NCBI MeSH: Cytidine Diphosphate
  • Wikipedia: Cytidine_diphosphate
  • DrugBank: DB04555
  • RefMet: RM0138946
  • MoNA: CCMSLIB00000578002
  • MoNA: CCMSLIB00000578247
  • MoNA: CCMSLIB00005464559
  • MoNA: CCMSLIB00005720443
  • MoNA: EMBL-MCF_spec125048
  • MoNA: EMBL-MCF_spec394124
  • MoNA: EMBL-MCF_spec394128
  • MoNA: EMBL-MCF_spec394140
  • MoNA: EMBL-MCF_spec53610
  • MoNA: EMBL_MCF_2_0_HRMS_Library000262
  • MoNA: KNA00213
  • MoNA: KNA00216
  • MoNA: KNA00800
  • MoNA: KNA00801
  • MoNA: KNA00802
  • MoNA: KNA00803
  • MoNA: MoNA024057
  • MoNA: MoNA024067
  • MoNA: MoNA034136
  • MoNA: MoNA034138
  • MoNA: MoNA034139
  • MoNA: MoNA037904
  • MoNA: PR100119
  • MoNA: PR100120
  • MoNA: PR100538
  • MoNA: PS019001
  • MoNA: PS019002
  • MoNA: PS019003
  • MoNA: PS019004
  • MoNA: PS019005
  • MoNA: PS019006
  • MoNA: PS019007
  • Metlin: METLIN_96
  • Coconut NaturalProduct: CNP0313073.1
  • Coconut NaturalProduct: CNP0313073.2

Class / Ontology

Metabolic Network
ID EC Number Name
KEGG:R00440 2.7.7.8 polyribonucleotide:phosphate cytidylyltransferase
KEGG:R00512 2.7.4.14 ATP:CMP phosphotransferase
KEGG:R00514 3.6.1.5 CDP phosphohydrolase
KEGG:R00569 3.6.1.5 CTP phosphohydrolase
KEGG:R00570 2.7.4.6 ATP:CDP phosphotransferase
KEGG:R00572 2.7.1.40 CTP:pyruvate 2-O-phosphotransferase
KEGG:R00767 2.7.1.11 CTP:D-fructose-6-phosphate 1-phosphotransferase
KEGG:R01018 2.7.1.108 CTP:dolichol O-phosphotransferase
KEGG:R02024 1.17.4.1 2'-deoxycytidine diphosphate:oxidized-thioredoxin 2'-oxidoreductase
KEGG:R03237 2.7.1.11 CTP:D-tagatose 6-phosphate 1-phosphotransferase
KEGG:R04581 2.4.1.60 CDPabequose:D-mannosyl-L-rhamnosyl-D-galactose-1-diphospholipid D-abequosyltransferase
KEGG:R08574 2.7.1.161 CTP:riboflavin 5'-phosphotransferase
KEGG:R09849 2.7.1.216 CTP:2-trans,6-trans-farnesol O-phosphotransferase
KEGG:R09850 2.7.4.32 CTP:farnesyl-phosphate phosphotransferase
KEGG:R09944 2.7.1.174 CTP:1,2-diacyl-sn-glycerol 3-phosphotransferase
KEGG:R10659 2.7.1.182 CTP:phytol O-phosphotransferase
KEGG:R12744 2.4.1.382 CDP-alpha-D-abequose:2-O-acetyl-alpha-L-rhamnopyranosyl-(1->2)-alpha-D-mannopyranosyl-(1->2)-alpha-D-mannopyranosyl-(1->3)-alpha-D-galactopyranosyl-diphospho-ditrans,octacis-undecaprenol 3IV-alpha-abequosyltransferase (configuration retaining)
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Organism Source

Taxonomy Source

Pathway Synthetic

pathway id name
BioCyc:LEISH_PWY0-166 pyrimidine deoxyribonucleotides de novo biosynthesis I
BioCyc:LEISH_PWY0-163 salvage pathways of pyrimidine ribonucleotides
BioCyc:TRYPANO_P1-PWY purine and pyrimidine metabolism
BioCyc:TRYPANO_PRPP-PWY superpathway of histidine, purine, and pyrimidine biosynthesis
BioCyc:TRYPANO_PWY0-166 pyrimidine deoxyribonucleotides de novo biosynthesis I
BioCyc:TRYPANO_PWY0-163 salvage pathways of pyrimidine ribonucleotides
BioCyc:LEISH_PWY3IU-2748 pyrimidine nucleotide metabolism (phosphotransfer and nucleotide modification)
BioCyc:LEISH_PWY-5687 pyrimidine ribonucleotides interconversion
BioCyc:LEISH_PWY0-162 pyrimidine ribonucleotides de novo biosynthesis
BioCyc:TRYPANO_PWY0-162 pyrimidine ribonucleotides de novo biosynthesis
BioCyc:TRYPANO_PWY-5687 pyrimidine ribonucleotides interconversion
PathBank:SMP0000959 Pyrimidine Metabolism
WikiPathways:WP3604 Biochemical pathways: part I
WikiPathways:WP4022 Pyrimidine metabolism
PathBank:SMP0120678 beta-Ureidopropionase Deficiency
PathBank:SMP0120750 MNGIE (Mitochondrial Neurogastrointestinal Encephalopathy)
PathBank:SMP0121324 Pyrimidine Metabolism
PathBank:SMP0000178 Dihydropyrimidinase Deficiency
PathBank:SMP0006719 Triacylglycerol metabolism TG(10:0/12:0/12:0)
PathBank:SMP0006723 Triacylglycerol metabolism TG(12:0/12:0/12:0)
View All Pathways