a cobamide lower ligand ribotide (BioCAD00000764426)

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Metabolite Card

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Synonyms [en]

a cobamide lower ligand ribotide

Reviewed

Last reviewed on 2024-06-28.

Cite this Page

a cobamide lower ligand ribotide. 数据之源,洞见之始. SMRUCC genomics institute, a synthetic life researcher from China. https://biocad_registry.innovation.ac.cn/s/(-)-arctiin (retrieved 2026-01-03) (CAD Registry RN: BioCAD00000764426). Licensed under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).

Note

|FRAME: Cobamides "A cobamide"| is a corrinoid molecule based on the structure of |FRAME: CPD-20843|, a cobalt-corrinoid hexaamide that is formed from |FRAME: COBINAMIDE| by the attachment of an α-D-ribofuranose 3-phosphate residue at the 2 position of the aminopropanol chain. Cobamides serve as cofactors for a number of important enzymes.A key structural feature of cobinamides is a corrin ring with a cobalt ion in its center. Four of the six coordination sites of the cobalt ion are provided by the corrin ring, while the other two are provided by |FRAME: Cobamide-Upper-Ligands upper| (β) and |FRAME: Cobamide-Lower-Ligands lower| (α) ligands, which are located above and below the ring plane, respectively. The best known cobamide, |FRAME: Cobalamins cobalamin|, contains |FRAME: DIMETHYLBENZIMIDAZOLE| as the lower ligand and either a methyl group or 5'-deoxyadenosyl group as the upper ligand.At least 16 different cobamides with structural variability in the lower ligand have been described. The 16 bases reported so far are |FRAME: BENZIMIDAZOLE|, |FRAME: CPD-18320|, |FRAME: CPD-18321|, |FRAME: CPD-18497|, |FRAME: CPD-18495|, |FRAME: DIMETHYLBENZIMIDAZOLE|, |FRAME: ADENINE|, |FRAME: CPD-18323|, |FRAME: GUANINE|, |FRAME: HYPOXANTHINE|, |FRAME: PHENOL|, |FRAME: CPD-108|, |FRAME: CPD-5723|, |FRAME: CPD-20865|, |FRAME: CPD-20864|, and |FRAME: CPD-20885| |CITS: [24055007]|. Different cobamides may not be functionally equivalent as cofactors for cobamide-dependent enzymes |CITS: [14351147][13796808][13796809][21696461][22923412][23417488]|.

Entity Information

DBLinks

Other DBLinks
  • BioCyc: Cobamide-Lower-Ligand-Ribotides

Class / Ontology

Metabolic Network
ID EC Number Name
BioCyc:RXN-22475 3.1.3.- Adenosylcobamide + WATER --> ADENOSYLCOBINAMIDE-P + Cobamide-Lower-Ligand-Ribotides + PROTON
BioCyc:RXN-22473 3.1.3.- Cobamides + WATER --> CPD-24509 + Cobamide-Lower-Ligand-Ribotides + PROTON
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Organism Source

Taxonomy Source

Pathway Synthetic

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