UDP (BioCAD00000019044)

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Metabolite Card

Formula: C9H14N2O12P2 (404.0022)
SMILES: O[C@H]1[C@@H](O)[C@@H](O[C@@H]1COP(O)(=O)OP(O)(O)=O)N1C=CC(=O)NC1=O

Synonyms [en]

UDP; Uridine 5'-diphosphate; Uridine Diphosphate; Uridine Pyrophosphate; Uridine 5'-(trihydrogen diphosphate); Uridine 5'-pyrophosphate

Reviewed

Last reviewed on 2024-06-28.

Cite this Page

UDP. 数据之源,洞见之始. SMRUCC genomics institute, a synthetic life researcher from China. https://biocad_registry.innovation.ac.cn/s/(-)-arctiin (retrieved 2026-01-03) (CAD Registry RN: BioCAD00000019044). Licensed under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).

Note

Uridine 5'-diphosphate, also known as 5'-UDP, UDP or uridine diphosphoric acid, belongs to the class of organic compounds known as pyrimidine ribonucleoside diphosphates. These are pyrimidine ribonucleotides with diphosphate group linked to the ribose moiety. UDP is also classified as a nucleotide diphosphate. It is an ester of pyrophosphoric acid with the nucleoside uridine. UDP consists of a pyrophosphate group, a pentose sugar ribose, and the nucleobase uracil. UDP exists in all living species, ranging from bacteria to plants to humans. In mammals UDP is an important factor in glycogenesis or the formation of glycogen in the liver. Before glucose can be stored as glycogen in the liver and muscles, the enzyme UDP-glucose pyrophosphorylase forms a UDP-glucose unit by combining glucose 1-phosphate with uridine triphosphate, cleaving a pyrophosphate ion in the process. Then, the enzyme glycogen synthase combines UDP-glucose units to form a glycogen chain. UDP is also an important extracellular pyrimidine signaling molecule that mediates diverse biological effects via P1 and P2 purinergic receptors, such as the uptake of thymidine and proliferation of gliomas. UDP plays a key role in the function of Uridine 5'-diphospho-glucuronosyltransferases (UDP-glucuronosyltransferases, UGTs) which catalyze the transfer of the glucuronic acid component of UDP-glucuronic acid to a small hydrophobic molecule. UDP-Glucuronosyltransferases are responsible for the process of glucuronidation, a major part of phase II metabolism. The reaction catalyzed by UGT enzymes involves the addition of a glucuronic acid moiety to xenobiotics and is the most important pathway for the human body's elimination of the most frequently prescribed drugs. It is also the major pathway for foreign chemical (dietary, environmental, pharmaceutical) removal for most drugs, dietary substances, toxins and endogenous substances. UGT is present in humans, other animals, plants, and bacteria. Famously, UGT enzymes are not present in the genus Felis (PMID: 10862526) and this accounts for a number of unusual toxicities in the cat family.

Entity Information

DBLinks

Other DBLinks
  • CAS Registry Number: 27821-45-0
  • CAS Registry Number: 58-98-0
  • PubChem: 6031
  • ChEBI: ChEBI:17659
  • HMDB: HMDB0000295
  • KEGG: C00015
  • NCBI MeSH: Uridine Diphosphate
  • Wikipedia: Uridine_diphosphate
  • DrugBank: DB03435
  • RefMet: RM0135932
  • MoNA: BAF_UVA_POS000941
  • MoNA: CCMSLIB00000578298
  • MoNA: CCMSLIB00005464492
  • MoNA: CCMSLIB00005720497
  • MoNA: CCMSLIB00005720789
  • MoNA: HMDB0000295_ms_ms_501
  • MoNA: HMDB0000295_ms_ms_502
  • MoNA: HMDB0000295_ms_ms_503
  • MoNA: MoNA023991
  • MoNA: MoNA024025
  • MoNA: MoNA034300
  • MoNA: MoNA034302
  • MoNA: MoNA034303
  • MoNA: MoNA037966
  • MoNA: MoNA_0006841
  • MoNA: MoNA_0006842
  • MoNA: MoNA_0006843
  • MoNA: MoNA_0006844
  • MoNA: MoNA_0006845
  • MoNA: MoNA_0006846
  • MoNA: MoNA_0007101
  • MoNA: MoNA_0007102
  • MoNA: MoNA_0007103
  • MoNA: MoNA_0007104
  • MoNA: MoNA_0007105
  • MoNA: MoNA_0007106
  • MoNA: MoNA_0008556
  • MoNA: MoNA_0008558
  • MoNA: MoNA_0008559
  • MoNA: MoNA_0008560
  • MoNA: MoNA_0008561
  • MoNA: MoNA_0008568
  • MoNA: MoNA_0008836
  • MoNA: MoNA_0008837
  • MoNA: MoNA_0008838
  • MoNA: MoNA_0008839
  • MoNA: MoNA_0008840
  • MoNA: MoNA_0009049
  • MoNA: MoNA_0009050
  • MoNA: MoNA_0009051
  • MoNA: MoNA_0009052
  • MoNA: MoNA_0009053
  • MoNA: MoNA_0009054
  • MoNA: MoNA_0009228
  • MoNA: MoNA_0009229
  • MoNA: MoNA_0009234
  • MoNA: PR100616
  • MoNA: PS036602
  • MoNA: PS036603
  • MoNA: PS036605
  • MoNA: PS036606
  • MoNA: PS036607
  • MoNA: PS036608
  • MoNA: PS036609
  • MoNA: PS036610
  • MoNA: PS036612
  • Metlin: METLIN_97
  • Coconut NaturalProduct: CNP0273645.1
  • Coconut NaturalProduct: CNP0273645.2
  • Coconut NaturalProduct: CNP0485715.1
  • Coconut NaturalProduct: CNP0485715.2
  • Coconut NaturalProduct: CNP0547495.1

Class / Ontology

Metabolic Network
ID EC Number Name
KEGG:R00155 3.6.1.5 UDP phosphohydrolase
KEGG:R00156 2.7.4.6 ATP:UDP phosphotransferase
KEGG:R00157 2.7.4.10 uridine triphosphate:AMP phosphotransferase;
KEGG:R00158 2.7.4.4 ATP:UMP phosphotransferase
KEGG:R00159 3.6.1.5 UTP phosphohydrolase
KEGG:R00292 2.4.1.11 UDP-glucose:glycogen 4-alpha-D-glucosyltransferase
KEGG:R00414 3.2.1.183 UDP-N-acetyl-D-glucosamine 2-epimerase
KEGG:R00417 2.4.1.94 UDP-N-acetyl-D-glucosamine:protein beta-N-acetyl-D-glucosaminyltransferase
KEGG:R00438 2.7.7.8 polyribonucleotide:phosphate uridylyltransferase
KEGG:R00503 2.4.1.22 UDP-alpha-D-galactose:D-glucose 4-beta-D-galactosyltransferase
KEGG:R00506 2.4.1.- UDP-alpha-D-galactose:galactan beta-1,4-D-galactosyltransferase
KEGG:R00659 2.7.1.40 UTP:pyruvate 2-O-phosphotransferase
KEGG:R00766 2.4.1.14 UDP-glucose:D-fructose-6-phosphate 2-alpha-D-glucosyltransferase
KEGG:R00769 2.7.1.11 UTP:D-fructose-6-phosphate 1-phosphotransferase
KEGG:R00806 2.4.1.13 UDP-glucose:D-fructose 2-alpha-D-glucosyltransferase
KEGG:R00809 2.4.1.167 UDP-alpha-D-galactose:sucrose 6F-alpha-D-galactosyltransferase
KEGG:R00836 2.4.1.15 UDP-glucose:D-glucose-6-phosphate 1-alpha-D-glucosyltransferase
KEGG:R00853 2.4.1.137 UDP-alpha-D-galactose:sn-glycerol-3-phosphate 2-alpha-D-galactosyltransferase
KEGG:R00854 2.4.1.96 UDP-alpha-D-galactose:sn-glycerol-3-phosphate 1-alpha-D-galactosyltransferase
KEGG:R01005 2.4.1.117 UDPglucose:dolichyl-phosphate beta-D-glucosyltransferase
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Organism Source

Taxonomy Source

  1. Arabidopsis thaliana [ncbi taxid: 3702]
  2. Escherichia coli [ncbi taxid: 562]
  3. FOOD SAKE [ncbi taxid: ]
  4. Escherichia coli [ncbi taxid: 562]
  5. Homo sapiens [ncbi taxid: 9606]
  6. Mus musculus [ncbi taxid: 10090]

Pathway Synthetic

pathway id name
BioCyc:LEISH_PWY3IU-20 glycophosphatidylinositol (GPI) anchor biosynthesis
BioCyc:LEISH_PWY0-166 pyrimidine deoxyribonucleotides de novo biosynthesis I
BioCyc:LEISH_PWY3IU-1 glycoinositolphospholipid (GIPL) biosynthesis
BioCyc:TRYPANO_PWY-3801 sucrose degradation to ethanol and lactate (anaerobic)
BioCyc:TRYPANO_PWY-3821 galactose degradation III
BioCyc:TRYPANO_P1-PWY purine and pyrimidine metabolism
BioCyc:TRYPANO_PRPP-PWY superpathway of histidine, purine, and pyrimidine biosynthesis
BioCyc:TRYPANO_PWY0-166 pyrimidine deoxyribonucleotides de novo biosynthesis I
BioCyc:TRYPANO_MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS dolichyl-diphosphooligosaccharide biosynthesis
BioCyc:CALBI_PWY3O-4031 glycogen biosynthesis
BioCyc:CALBI_PRPP-PWY superpathway of histidine, purine and pyrimidine biosynthesis
BioCyc:CALBI_PWY0-166 pyrimidine deoxyribonucleotides de novo biosynthesis
BioCyc:LEISH_PWY3IU-2748 pyrimidine nucleotide metabolism (phosphotransfer and nucleotide modification)
BioCyc:TRYPANO_PWY-621 sucrose degradation III
BioCyc:TRYPANO_PEP-LIPA-SYN-PWY peptidoglycan and lipid A precursor biosynthesis
BioCyc:TRYPANO_PWY1G-0 mycothiol biosynthesis
BioCyc:LEISH_PWY3IU-555 lipophosphoglycan (LPG) biosynthesis
BioCyc:LEISH_SUCSYN-PWY sucrose biosynthesis
BioCyc:TRYPANO_PEPTIDOGLYCANSYN-PWY peptidoglycan biosynthesis I (meso-diaminopimelate containing)
BioCyc:TRYPANO_PWY-3742 tetrahydrofolate biosynthesis I
View All Pathways