UDP (BioCAD00000019044)
Metabolite Card
Formula: C9H14N2O12P2 (404.0022)
SMILES: O[C@H]1[C@@H](O)[C@@H](O[C@@H]1COP(O)(=O)OP(O)(O)=O)N1C=CC(=O)NC1=O
Synonyms [en]
UDP; Uridine 5'-diphosphate; Uridine Diphosphate; Uridine Pyrophosphate; Uridine 5'-(trihydrogen diphosphate); Uridine 5'-pyrophosphate
Last reviewed on 2024-06-28.
Cite this Page
UDP. 数据之源,洞见之始. SMRUCC genomics institute, a synthetic life researcher from China.
https://biocad_registry.innovation.ac.cn/s/(-)-arctiin
(retrieved
2026-01-03) (CAD Registry RN: BioCAD00000019044). Licensed
under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).
Note
Uridine 5'-diphosphate, also known as 5'-UDP, UDP or uridine diphosphoric acid, belongs to the class of organic compounds known as pyrimidine ribonucleoside diphosphates. These are pyrimidine ribonucleotides with diphosphate group linked to the ribose moiety. UDP is also classified as a nucleotide diphosphate. It is an ester of pyrophosphoric acid with the nucleoside uridine. UDP consists of a pyrophosphate group, a pentose sugar ribose, and the nucleobase uracil. UDP exists in all living species, ranging from bacteria to plants to humans. In mammals UDP is an important factor in glycogenesis or the formation of glycogen in the liver. Before glucose can be stored as glycogen in the liver and muscles, the enzyme UDP-glucose pyrophosphorylase forms a UDP-glucose unit by combining glucose 1-phosphate with uridine triphosphate, cleaving a pyrophosphate ion in the process. Then, the enzyme glycogen synthase combines UDP-glucose units to form a glycogen chain. UDP is also an important extracellular pyrimidine signaling molecule that mediates diverse biological effects via P1 and P2 purinergic receptors, such as the uptake of thymidine and proliferation of gliomas. UDP plays a key role in the function of Uridine 5'-diphospho-glucuronosyltransferases (UDP-glucuronosyltransferases, UGTs) which catalyze the transfer of the glucuronic acid component of UDP-glucuronic acid to a small hydrophobic molecule. UDP-Glucuronosyltransferases are responsible for the process of glucuronidation, a major part of phase II metabolism. The reaction catalyzed by UGT enzymes involves the addition of a glucuronic acid moiety to xenobiotics and is the most important pathway for the human body's elimination of the most frequently prescribed drugs. It is also the major pathway for foreign chemical (dietary, environmental, pharmaceutical) removal for most drugs, dietary substances, toxins and endogenous substances. UGT is present in humans, other animals, plants, and bacteria. Famously, UGT enzymes are not present in the genus Felis (PMID: 10862526) and this accounts for a number of unusual toxicities in the cat family.
DBLinks
- CAS Registry Number: 58-98-0
- PubChem CID: 6031
- ChEBI: 17659
- HMDB: HMDB0000295
- LipidMaps:
- KEGG: C00015
- BioCyc:
- NCBI MeSH: Uridine Diphosphate
- Wikipedia: Uridine_Diphosphate
Other DBLinks
- CAS Registry Number: 27821-45-0
- CAS Registry Number: 58-98-0
- PubChem: 6031
- ChEBI: ChEBI:17659
- HMDB: HMDB0000295
- KEGG: C00015
- NCBI MeSH: Uridine Diphosphate
- Wikipedia: Uridine_diphosphate
- DrugBank: DB03435
- RefMet: RM0135932
- MoNA: BAF_UVA_POS000941
- MoNA: CCMSLIB00000578298
- MoNA: CCMSLIB00005464492
- MoNA: CCMSLIB00005720497
- MoNA: CCMSLIB00005720789
- MoNA: HMDB0000295_ms_ms_501
- MoNA: HMDB0000295_ms_ms_502
- MoNA: HMDB0000295_ms_ms_503
- MoNA: MoNA023991
- MoNA: MoNA024025
- MoNA: MoNA034300
- MoNA: MoNA034302
- MoNA: MoNA034303
- MoNA: MoNA037966
- MoNA: MoNA_0006841
- MoNA: MoNA_0006842
- MoNA: MoNA_0006843
- MoNA: MoNA_0006844
- MoNA: MoNA_0006845
- MoNA: MoNA_0006846
- MoNA: MoNA_0007101
- MoNA: MoNA_0007102
- MoNA: MoNA_0007103
- MoNA: MoNA_0007104
- MoNA: MoNA_0007105
- MoNA: MoNA_0007106
- MoNA: MoNA_0008556
- MoNA: MoNA_0008558
- MoNA: MoNA_0008559
- MoNA: MoNA_0008560
- MoNA: MoNA_0008561
- MoNA: MoNA_0008568
- MoNA: MoNA_0008836
- MoNA: MoNA_0008837
- MoNA: MoNA_0008838
- MoNA: MoNA_0008839
- MoNA: MoNA_0008840
- MoNA: MoNA_0009049
- MoNA: MoNA_0009050
- MoNA: MoNA_0009051
- MoNA: MoNA_0009052
- MoNA: MoNA_0009053
- MoNA: MoNA_0009054
- MoNA: MoNA_0009228
- MoNA: MoNA_0009229
- MoNA: MoNA_0009234
- MoNA: PR100616
- MoNA: PS036602
- MoNA: PS036603
- MoNA: PS036605
- MoNA: PS036606
- MoNA: PS036607
- MoNA: PS036608
- MoNA: PS036609
- MoNA: PS036610
- MoNA: PS036612
- Metlin: METLIN_97
- Coconut NaturalProduct: CNP0273645.1
- Coconut NaturalProduct: CNP0273645.2
- Coconut NaturalProduct: CNP0485715.1
- Coconut NaturalProduct: CNP0485715.2
- Coconut NaturalProduct: CNP0547495.1
Class / Ontology
- WishartLab ClassyFire: [Pyrimidine ribonucleotides] Pyrimidine ribonucleotides
- RefMet: [Pyrimidine rNDP] Pyrimidine rNDP
- ChEBI: [CHEBI:17659] UDP
- Coconut NaturalProduct: [Nucleosides] Nucleosides
- Coconut NaturalProduct: [Dipeptides] Dipeptides
| ID | EC Number | Name |
|---|---|---|
| KEGG:R00155 | 3.6.1.5 | UDP phosphohydrolase |
| KEGG:R00156 | 2.7.4.6 | ATP:UDP phosphotransferase |
| KEGG:R00157 | 2.7.4.10 | uridine triphosphate:AMP phosphotransferase; |
| KEGG:R00158 | 2.7.4.4 | ATP:UMP phosphotransferase |
| KEGG:R00159 | 3.6.1.5 | UTP phosphohydrolase |
| KEGG:R00292 | 2.4.1.11 | UDP-glucose:glycogen 4-alpha-D-glucosyltransferase |
| KEGG:R00414 | 3.2.1.183 | UDP-N-acetyl-D-glucosamine 2-epimerase |
| KEGG:R00417 | 2.4.1.94 | UDP-N-acetyl-D-glucosamine:protein beta-N-acetyl-D-glucosaminyltransferase |
| KEGG:R00438 | 2.7.7.8 | polyribonucleotide:phosphate uridylyltransferase |
| KEGG:R00503 | 2.4.1.22 | UDP-alpha-D-galactose:D-glucose 4-beta-D-galactosyltransferase |
| KEGG:R00506 | 2.4.1.- | UDP-alpha-D-galactose:galactan beta-1,4-D-galactosyltransferase |
| KEGG:R00659 | 2.7.1.40 | UTP:pyruvate 2-O-phosphotransferase |
| KEGG:R00766 | 2.4.1.14 | UDP-glucose:D-fructose-6-phosphate 2-alpha-D-glucosyltransferase |
| KEGG:R00769 | 2.7.1.11 | UTP:D-fructose-6-phosphate 1-phosphotransferase |
| KEGG:R00806 | 2.4.1.13 | UDP-glucose:D-fructose 2-alpha-D-glucosyltransferase |
| KEGG:R00809 | 2.4.1.167 | UDP-alpha-D-galactose:sucrose 6F-alpha-D-galactosyltransferase |
| KEGG:R00836 | 2.4.1.15 | UDP-glucose:D-glucose-6-phosphate 1-alpha-D-glucosyltransferase |
| KEGG:R00853 | 2.4.1.137 | UDP-alpha-D-galactose:sn-glycerol-3-phosphate 2-alpha-D-galactosyltransferase |
| KEGG:R00854 | 2.4.1.96 | UDP-alpha-D-galactose:sn-glycerol-3-phosphate 1-alpha-D-galactosyltransferase |
| KEGG:R01005 | 2.4.1.117 | UDPglucose:dolichyl-phosphate beta-D-glucosyltransferase |
Taxonomy Source
- Arabidopsis thaliana [ncbi taxid: 3702]
- Escherichia coli [ncbi taxid: 562]
- FOOD SAKE [ncbi taxid: ]
- Escherichia coli [ncbi taxid: 562]
- Homo sapiens [ncbi taxid: 9606]
- Mus musculus [ncbi taxid: 10090]
Pathway Synthetic
| pathway id | name |
|---|---|
| BioCyc:LEISH_PWY3IU-20 | glycophosphatidylinositol (GPI) anchor biosynthesis |
| BioCyc:LEISH_PWY0-166 | pyrimidine deoxyribonucleotides de novo biosynthesis I |
| BioCyc:LEISH_PWY3IU-1 | glycoinositolphospholipid (GIPL) biosynthesis |
| BioCyc:TRYPANO_PWY-3801 | sucrose degradation to ethanol and lactate (anaerobic) |
| BioCyc:TRYPANO_PWY-3821 | galactose degradation III |
| BioCyc:TRYPANO_P1-PWY | purine and pyrimidine metabolism |
| BioCyc:TRYPANO_PRPP-PWY | superpathway of histidine, purine, and pyrimidine biosynthesis |
| BioCyc:TRYPANO_PWY0-166 | pyrimidine deoxyribonucleotides de novo biosynthesis I |
| BioCyc:TRYPANO_MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS | dolichyl-diphosphooligosaccharide biosynthesis |
| BioCyc:CALBI_PWY3O-4031 | glycogen biosynthesis |
| BioCyc:CALBI_PRPP-PWY | superpathway of histidine, purine and pyrimidine biosynthesis |
| BioCyc:CALBI_PWY0-166 | pyrimidine deoxyribonucleotides de novo biosynthesis |
| BioCyc:LEISH_PWY3IU-2748 | pyrimidine nucleotide metabolism (phosphotransfer and nucleotide modification) |
| BioCyc:TRYPANO_PWY-621 | sucrose degradation III |
| BioCyc:TRYPANO_PEP-LIPA-SYN-PWY | peptidoglycan and lipid A precursor biosynthesis |
| BioCyc:TRYPANO_PWY1G-0 | mycothiol biosynthesis |
| BioCyc:LEISH_PWY3IU-555 | lipophosphoglycan (LPG) biosynthesis |
| BioCyc:LEISH_SUCSYN-PWY | sucrose biosynthesis |
| BioCyc:TRYPANO_PEPTIDOGLYCANSYN-PWY | peptidoglycan biosynthesis I (meso-diaminopimelate containing) |
| BioCyc:TRYPANO_PWY-3742 | tetrahydrofolate biosynthesis I |