1-Deoxy-D-xylulose 5-phosphate (BioCAD00000001325)

plant natural products microbial natural products

Metabolite Card

Formula: C5H11O7P (214.0242)
SMILES: CC(=O)[C@@H](O)[C@H](O)COP(O)(O)=O

Synonyms [en]

1-deoxy-D-xylulose 5-phosphate; 1-Deoxy-D-xylulose-5-phosphate; D-1-deoxyxylulose-5-P; 1-deoxylulose 5-phosphate; 1-deoxy-D-threo-pentulose 5-phosphate; 1-Deoxy-5-O-phosphonopent-2-ulose

Reviewed

Last reviewed on 2024-06-28.

Cite this Page

1-Deoxy-D-xylulose 5-phosphate. 数据之源，洞见之始. SMRUCC genomics institute, a synthetic life researcher from China. https://biocad_registry.innovation.ac.cn/s/(-)-arctiin (retrieved 2026-01-03) (CAD Registry RN: BioCAD00000001325). Licensed under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).

Note

1-Deoxy-D-xylulose 5-phosphate is a substrate for 2,4-dienoyl-CoA reductase (mitochondrial). It has been found to be a metabolite of Escherichia and Streptomyces (PMID: 10648511; PMID: 9371765).

Cytoplasm
Entity Information

DBLinks

Other DBLinks
  • CAS Registry Number: 190079-18-6
  • PubChem: 443201
  • ChEBI: ChEBI:16493
  • HMDB: HMDB0001213
  • HMDB: HMDB01213
  • KEGG: C11437
  • NCBI MeSH: 1-deoxylulose 5-phosphate
  • Wikipedia: 1-Deoxy-D-xylulose 5-phosphate
  • Wikipedia: 1-Deoxy-D-xylulose_5-phosphate
  • DrugBank: DB02496
  • RefMet: RM0136080
  • Metlin: METLIN_6085
  • Coconut NaturalProduct: CNP0343667.1

Class / Ontology

Metabolic Network
ID EC Number Name
KEGG:R05636 2.2.1.7 1-deoxy-D-xylulose-5-phosphate pyruvate-lyase (carboxylating)
KEGG:R05688 1.1.1.267 1-deoxy-D-xylulose-5-phosphate isomeroreductase
KEGG:R05838 2.6.99.2 pyridoxine 5'-phosphate synthase
KEGG:R10247 2.8.1.10 1-deoxy-D-xylulose 5-phosphate:thiol sulfurtransferase
KEGG:R12946 2.8.4.6 S-methyl-1-thio-D-xylulose 5-phosphate:glutathione methylthiotransferase
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Organism Source

Taxonomy Source

  1. Arabidopsis thaliana [ncbi taxid: 3702]
  2. Escherichia coli [ncbi taxid: 562]
  3. Streptomyces CL190 [ncbi taxid: ]

Pathway Synthetic

pathway id name
PathBank:SMP0000974 Secondary Metabolites: Methylerythritol Phosphate and Polyisoprenoid Biosynthesis
PathBank:SMP0000991 Secondary Metabolites: Isoprenoid Biosynthesis (Nonmevalonate Pathway)
PathBank:SMP0002055 Thiazole Biosynthesis I
Plant Reactome:R-OAU-2744345 Metabolism and regulation
Plant Reactome:R-OAU-1119464 DXP pathway
Plant Reactome:R-OAU-1119629 Thiamin biosynthesis
Plant Reactome:R-TAE-1119594 Pyridoxal 5'-phosphate biosynthesis
Plant Reactome:R-MES-2744345 Metabolism and regulation
Plant Reactome:R-MES-2867929 Cofactor biosyntheses
Plant Reactome:R-TDI-2744345 Metabolism and regulation
Plant Reactome:R-DRO-2744345 Metabolism and regulation
Plant Reactome:R-OMI-1119464 DXP pathway
Plant Reactome:R-OMI-1119629 Thiamin biosynthesis
Plant Reactome:R-GSU-1119594 Pyridoxal 5'-phosphate biosynthesis
Plant Reactome:R-PTI-2744345 Metabolism and regulation
Plant Reactome:R-PTI-2867929 Cofactor biosyntheses
Plant Reactome:R-GMA-2744345 Metabolism and regulation
Plant Reactome:R-PDA-2744345 Metabolism and regulation
Plant Reactome:R-PDA-1119464 DXP pathway
Plant Reactome:R-PVU-2744345 Metabolism and regulation
View All Pathways